yybJ
168
similar to [wiki|ABC transporter ]([metabolite|ATP]-binding protein)
locus
BSU_40620
Molecular weight
24.13 kDa
pI
8.68
function
unknown
product
[wiki|ABC transporter ]([metabolite|ATP]-binding protein)
essential
no
synonyms
yybJ
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1131 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
4,175,869 4,176,525
The protein
Protein family
[wiki|ABC transporter superfamily] (according to UniProt)
[wiki|Domains]
[wiki|ABC transporter domain] (aa 2-216) (according to UniProt)
Structure
[PDB|1VPL] (from Thermotoga maritima, 35% identity)
[AF|P37494]
Expression and Regulation
Operons
genes
[gene|5A68286ADFB1B334DC626612C74D03AE4DBAF0A7|yybN]-[gene|BA4CB875FD72C7E7767AFA44A5D8C32448F5E18C|yybM]-[gene|CE98D731B8D9BDBF4EB119346BB59F5E5C48C827|yybL]-[gene|8950AD10BE5B6EDA74C341D272201D1BA9DBAC85|yybK]-[gene|6260516A5ED4A49457997592F29CEC10B7A2CCA7|yybJ]
description
[pubmed|22383849]
regulation
repressed by [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|rok]-[wiki|DnaA] [Pubmed| 27902860,15743949]
regulatory mechanism
[protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|rok]: repression, [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|rok]-[protein|6740108089F13116F200C15F35C2E7561E990FEB|dnaA] [Pubmed|27902860,15743949], in [regulon|protein:1508770D5BCA5739D13E3ABD11CC5C103C07FF25|rok regulon]
[protein|6740108089F13116F200C15F35C2E7561E990FEB|dnaA]: repression, [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|rok]-[protein|6740108089F13116F200C15F35C2E7561E990FEB|dnaA] [Pubmed|27902860,15743949], in [regulon|protein:6740108089F13116F200C15F35C2E7561E990FEB|dnaA regulon]
Biological materials
Mutant
MGNA-B844 (yybJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1843 NBRP B. subtilis, Japan]
BKE40620 ([gene|6260516A5ED4A49457997592F29CEC10B7A2CCA7|yybJ]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE40620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTTGTTAGGTTTAATACCT, downstream forward: _UP4_TAGTTTAAACTGGCTATTTC
BKK40620 ([gene|6260516A5ED4A49457997592F29CEC10B7A2CCA7|yybJ]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK40620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTTGTTAGGTTTAATACCT, downstream forward: _UP4_TAGTTTAAACTGGCTATTTC
References
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Time of last update: 2024-12-26 04:42:57
Author of last update: Jstuelk