trmN6
168
tRNA methyltransferase
locus
BSU_00340
Molecular weight
28.13 kDa
pI
6.5
function
tRNA modification
product
tRNA methyltransferase
essential
no
synonyms
trmN6, yabB
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG4123 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
42,917 43,660
The protein
Structure
[PDB|3LPM] (putative methyltransferase from Listeria monocytogenes, 64% identity)
[AF|P37543]
Expression and Regulation
Operons
genes
[gene|08314FA6195D553B8522BCD3B45FEE0EAB51F64D|xpaC]-[gene|5231A0EE9C5A7556817B686D5B2B7B72B675BCAC|yaaN]-[gene|EEF3E572ED2F23581EB9B48D16B3112B886F7975|yaaO]-[gene|5B9984BBCEC1244628DC1467BE26976AD8E06286|tmk]-[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]-[gene|3422E4C34EAAF355A9767F1AD8DFAE9A6A756F0C|yaaR]-[gene|DC867376EF4F9CC7663A9B76AA260AC3CA11595A|holB]-[gene|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|ricT]-[gene|A039228A3805F4E7C5C2AE31C7DB0808562E88E3|yabA]-[gene|55C4B4B7B46B6D04EF712BD79407C0B04DDC6A34|trmN6]-[gene|47859E62AABA5A57AC6F5F80CDE4ED52FC7F879F|yazA]-[gene|FB71FFDEABF17228CA2BD5F3DE0C8A9A2C22485D|yabC]
description
[Pubmed|22383849]
genes
[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]-[gene|3422E4C34EAAF355A9767F1AD8DFAE9A6A756F0C|yaaR]-[gene|DC867376EF4F9CC7663A9B76AA260AC3CA11595A|holB]-[gene|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|ricT]-[gene|A039228A3805F4E7C5C2AE31C7DB0808562E88E3|yabA]-[gene|55C4B4B7B46B6D04EF712BD79407C0B04DDC6A34|trmN6]-[gene|47859E62AABA5A57AC6F5F80CDE4ED52FC7F879F|yazA]-[gene|FB71FFDEABF17228CA2BD5F3DE0C8A9A2C22485D|yabC]
description
[Pubmed|22383849]
regulation
expressed during growth and the transition phase, expression is erduced in stationary phase [Pubmed|23490197]
genes
[gene|5B9984BBCEC1244628DC1467BE26976AD8E06286|tmk]-[gene|31C8DCB4E1E225AC92EC2E11835234C4668AB326|darA]-[gene|3422E4C34EAAF355A9767F1AD8DFAE9A6A756F0C|yaaR]-[gene|DC867376EF4F9CC7663A9B76AA260AC3CA11595A|holB]-[gene|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|ricT]-[gene|A039228A3805F4E7C5C2AE31C7DB0808562E88E3|yabA]-[gene|55C4B4B7B46B6D04EF712BD79407C0B04DDC6A34|trmN6]-[gene|47859E62AABA5A57AC6F5F80CDE4ED52FC7F879F|yazA]-[gene|FB71FFDEABF17228CA2BD5F3DE0C8A9A2C22485D|yabC]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-B901 (yabB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1900 NBRP B. subtilis, Japan]
BKE00340 ([gene|55C4B4B7B46B6D04EF712BD79407C0B04DDC6A34|trmN6]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE00340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTCTTATCCTTTCAGT, downstream forward: _UP4_ACAAAAGAAATCAGGACCAT
BKK00340 ([gene|55C4B4B7B46B6D04EF712BD79407C0B04DDC6A34|trmN6]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK00340 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTCTTATCCTTTCAGT, downstream forward: _UP4_ACAAAAGAAATCAGGACCAT
References
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Time of last update: 2025-01-03 18:07:56
Author of last update: Jstuelk