yrrK

yrrK
168

processing of the 5 end of pre-16S rRNA (based on similarity to E. coli YqgF)

locus
BSU_27390
Molecular weight
15.07 kDa
pI
5.32
Protein length
Gene length
function
16S rRNA maturation
product
putative RNase
essential
no
synonyms
yrrK

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0816 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,797,399  2,797,815
The protein
Protein family
YqgF nuclease family (single member, according to UniProt)
[wiki|Domains]
[wiki|YqgF/RNase H-like domain] (aa 1 ... 103) (according to the Interpro database)
Structure
[PDB|1VHX] [Pubmed|16021622]
[AF|O34634]
Expression and Regulation
Operons
genes
[gene|C5457FEC46A1AFC6E5B1148B0E5F258B2C3197B2|reoM]-[gene|508FC7117B4CE7AF119B3830AE9DC113CB058039|yrrK]-[gene|A0AA5289F5E92A4B2E18E4F3439F2D412208826E|yrzB]
description
[pubmed|22383849]
Open in new tab

[gene|C5457FEC46A1AFC6E5B1148B0E5F258B2C3197B2|reoM]->[gene|A0AA5289F5E92A4B2E18E4F3439F2D412208826E|yrzB]

2024-09-26 06:38:35

Bzhu

62

13604f7ff8a332a31b3eeac85d34d0390bab5a6b

A0B9F1DCCECD01642A67F9491E3DE8A7C80DD674

genes
[gene|8C5C7F9A585AE89D53EAF1DB3A9AB525B9E30B4A|alaS]-[gene|C5457FEC46A1AFC6E5B1148B0E5F258B2C3197B2|reoM]-[gene|508FC7117B4CE7AF119B3830AE9DC113CB058039|yrrK]-[gene|A0AA5289F5E92A4B2E18E4F3439F2D412208826E|yrzB]
description
[pubmed|22383849]
regulation
induced by alanine limitation ([regulon|T-box|]) [Pubmed|19258532]
regulatory mechanism
T-box: RNA switch, [pubmed|], in [regulon|other_regulator:T-box|T-box]
Open in new tab

[gene|8C5C7F9A585AE89D53EAF1DB3A9AB525B9E30B4A|alaS]->[gene|A0AA5289F5E92A4B2E18E4F3439F2D412208826E|yrzB]

2024-09-24 09:52:36

Bzhu

104

1fe3dcf0db8626f9ee3da1f804086613bec215b9

F35CA2CD94C7D88BA9469B9BEE16089909E658A6

Biological materials
Mutant
MGNA-B514 (yrrK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1513 NBRP B. subtilis, Japan]
BKE27390 ([gene|508FC7117B4CE7AF119B3830AE9DC113CB058039|yrrK]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE27390 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_GAGTCCTAATATTCTCATTC,  downstream forward: _UP4_AATTAAAGCCAGAGGTGAAG
BKK27390 ([gene|508FC7117B4CE7AF119B3830AE9DC113CB058039|yrrK]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK27390 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_GAGTCCTAATATTCTCATTC,  downstream forward: _UP4_AATTAAAGCCAGAGGTGAAG
References
25545592,27527105,16021622

508FC7117B4CE7AF119B3830AE9DC113CB058039

Page visits: 2180

Time of last update: 2024-10-03 17:51:36

Author of last update: Melvin.boenninger