ydcQ

ydcQ
168

coupling protein, part of the type IV secretion system for DNA transfer

locus
BSU_04860
Molecular weight
54.57 kDa
pI
9.28
Protein length
Gene length
function
conjugative transfer of ICEBs1
product
coupling protein, part of the type IV secretion system for DNA transfer
essential
no
ec
null
synonyms
ydcQ, conQ

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1674 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
533,338  534,780
The protein
[wiki|Domains]
[wiki|FtsK domain] (aa 217-399) (according to UniProt)
Structure
[PDB|6O1X] (from Clostridium perfringens, corresponds to aa 219 ... 396, 27% identity)
[AF|P96634]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|EE2A4068CBD7A2F852E582E2EDA4148381F1CD61|xis]-[gene|2227923C603B290AB276238F789D71584FB07DF3|ydzL]-[gene|34451538F10B4ABCFC8A236C8C905A20D989EBCF|devI]-[gene|C042792D9A643DCFF4A851EFECA3CF2C31E1EDAF|ydcP]-[gene|4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0|ydcQ]-[gene|8E179976C35FE09F92A191D00E497ED4BF28F571|nicK]-[gene|886B2132717BA4C72433ABE351C5791C9DE1432A|S172]-[gene|1699CFBF5400CAF43C6DAE8ADCCE5A360B31F2E9|ydcS]-[gene|9D4918852A1856B1CDD72D49AEA75E51A8602BB6|ydcT]-[gene|62CEABA069CA2970F22B7E0C369D540A2A027A8D|yddA]-[gene|A0AFD543582D2FE8B1139CF69B7B1F7FF0F80265|conB]-[gene|F273A8817E66B44D58FC2BCB6576A30D8616B750|conC]-[gene|F1F898D7A9FDF78D2E5E8F3BF605E0F735D0542A|conD]-[gene|D20F724D8C3E8C758A9FADF133CD43F066BD8D48|conE]-[gene|B3A07E2A61151C33B7C65D1BC58B97BFDB76852D|yddF]-[gene|3356A43B83E2D4D66098F17A751F0912C1553398|conG]-[gene|8D9D81E05BAA8697F002BB1B8DBC5ABBA557353F|cwlT]-[gene|2E4FF80C857B3F40BA835814EC40D6562721AEFE|yddI]-[gene|2FB1C9435AE924F8E450AFA81F800196A871F2D0|yddJ]
description
[pubmed|22383849]
regulatory mechanism
[protein|DD1C8F3A4809785BD6A6047D39B42AB2C605E161|immR]: repression, [Pubmed|17511812], in [regulon|protein:DD1C8F3A4809785BD6A6047D39B42AB2C605E161|immR regulon]
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[gene|EE2A4068CBD7A2F852E582E2EDA4148381F1CD61|xis]->[gene|2FB1C9435AE924F8E450AFA81F800196A871F2D0|yddJ]

2024-08-27 17:45:07

Bzhu

62

9225e26ee70027d168e8ea0db13fb48c93ef1ef8

DE8D2BDC2F23AB45C58B0FE511E7B4816A65A489

Biological materials
Mutant
BKE04860 ([gene|4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0|ydcQ]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04860 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATACATCACCCGCCTGC,  downstream forward: _UP4_AGCGGCGAAGGAGTGAGCGA
BKK04860 ([gene|4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0|ydcQ]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04860 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATATACATCACCCGCCTGC,  downstream forward: _UP4_AGCGGCGAAGGAGTGAGCGA
References
23326247,26013486

4BCAA5939CB7F0DF23495BC92C9EF0A0149296A0

Page visits: 2008

Time of last update: 2024-10-06 05:28:30

Author of last update: Jstuelk