yxkD
168
unknown
locus
BSU_38840
Molecular weight
30.58 kDa
pI
8.61
function
unknown
product
unknown
essential
no
synonyms
yxkD
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1284 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
3,987,927 3,988,763
The protein
Protein family
[wiki|UPF0750 membrane proteins] (according to UniProt)
Structure
[AF|P94357]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]
description
[Pubmed|10746760]
regulation
induced in the presence of guanidine ([wiki|ykkC riboswitch]) [Pubmed|27989440]
regulatory mechanism
E9866855F0156859C45E98F3B385FE1263BB7EBC: RNA switch, in [regulon|other_regulator:E9866855F0156859C45E98F3B385FE1263BB7EBC|E9866855F0156859C45E98F3B385FE1263BB7EBC]
additional information
term-seq has identified a potential novel regulatory RNA element including an intrinsic transcription terminator upstream of ''yxkD'' [Pubmed|27120414]
Biological materials
Mutant
MGNA-B738 (yxkD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1737 NBRP B. subtilis, Japan]
BKE38840 ([gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE38840 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACGAAAACACTCCTTT, downstream forward: _UP4_TAAAGAAAAATCCCTCTGTA
BKK38840 ([gene|417714CA91427D583ED87E4804DE399D53A51C71|yxkD]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK38840 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACGAAAACACTCCTTT, downstream forward: _UP4_TAAAGAAAAATCCCTCTGTA
References
Reviews
Original Publications
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Time of last update: 2025-01-25 08:17:21
Author of last update: Melvin.boenninger