oppF

oppF
168

oligopeptide [wiki|ABC transporter] (ATP-binding protein)

locus
BSU_11470
Molecular weight
34.59 kDa
pI
6.95
Protein length
Gene length
function
initiation of sporulation, competence development
product
oligopeptide [wiki|ABC transporter] (ATP-binding protein)
essential
no
synonyms
oppF, spo0KE

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1123 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,224,533  1,225,450
The protein
Catalyzed reaction/ biological activity
required for the uptake of quorum sensing peptides such as [protein|4FA7D6E6316A6FC71C10C692D125833263894020|phrH] [Pubmed|21908671]
Protein family
[wiki|ABC transporter superfamily] (according to UniProt)
[wiki|Domains]
[wiki|ABC transporter domain] (aa 6-251) (according to UniProt)
Structure
[PDB|3DHW] (MetN from E. coli, 33% identity) [pubmed|18621668]
[AF|P24137]
Paralogous protein(s)
[protein|B88A88B4792FFFF4E1609B1FC91AAE6DBA339044|appF], [protein|BB94F5388A0D1FF025E5A88A7E10AE7E4C489E5F|ykfD]
[wiki|Localization]
attached to the cell membrane (via [protein|B0A3C7B253FB1DA1D4BC9D1D564905ECE8A65BC1|oppB]-[protein|DDBCE73B6AF39E5D669475479186C93F287DA9FC|oppC]) [Pubmed|10092453]
Expression and Regulation
Operons
genes
[gene|302DFA46D73E18C4663468ED6033C55056744475|oppA]-[gene|B0A3C7B253FB1DA1D4BC9D1D564905ECE8A65BC1|oppB]-[gene|DDBCE73B6AF39E5D669475479186C93F287DA9FC|oppC]-[gene|05752B9C4EA7ACD579D65D028B7DF1861F3840CB|oppD]-[gene|38AD697B6C9967B8BD7496E31264A21F6D0A9DEE|oppF]
description
[Pubmed|1901616]
regulation
expressed in the absence of good nitrogen sources (glutamine or ammonium) ([protein|search|TnrA]) [Pubmed|12823818]
regulatory mechanism
[protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|tnrA]: activation, [Pubmed|12823818], in [regulon|protein:857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|tnrA regulon]
[protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|codY]: repression, no derepression occurs, however, in a [protein|90ACE0DECA58D3C1A55E135120F7A0C1C920571C|codY] mutant, due to increased repression by [protein|F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|scoC] [Pubmed|25966844], in [regulon|protein:90ACE0DECA58D3C1A55E135120F7A0C1C920571C|codY regulon]
[protein|F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|scoC]: repression, [Pubmed|10383984], in [regulon|protein:F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|scoC regulon]
additional information
A [protein|search|ncRNA] is predicted between '[protein|search|trpS]' and '[protein|search|oppA]' [PubMed|20525796]
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[gene|302DFA46D73E18C4663468ED6033C55056744475|oppA]→[gene|38AD697B6C9967B8BD7496E31264A21F6D0A9DEE|oppF]

2024-10-09 20:17:00

ghost

117

70070544ac18e9c940a824c6284e4ee6740ee2e5

E173E2B9FD2733A51C073CE2F9C6DE998F2580A2

Biological materials
Mutant
GP2097 (D(''[gene|302DFA46D73E18C4663468ED6033C55056744475|oppA]-[gene|B0A3C7B253FB1DA1D4BC9D1D564905ECE8A65BC1|oppB]-[gene|DDBCE73B6AF39E5D669475479186C93F287DA9FC|oppC]-[gene|05752B9C4EA7ACD579D65D028B7DF1861F3840CB|oppD]-[gene|38AD697B6C9967B8BD7496E31264A21F6D0A9DEE|oppF]'')::''aphA3''), available in [wiki|Jörg Stülke]'s lab
BKE11470 ([gene|38AD697B6C9967B8BD7496E31264A21F6D0A9DEE|oppF]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE11470 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAATTCATTCAACTTCTCTC,  downstream forward: _UP4_TGATTCATCAATCCTTCAAG
BKK11470 ([gene|38AD697B6C9967B8BD7496E31264A21F6D0A9DEE|oppF]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK11470 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CAATTCATTCAACTTCTCTC,  downstream forward: _UP4_TGATTCATCAATCCTTCAAG
References
36815589,27231947,1901616,10092453,9252573,1899858,21908671,12823818,10383984,25966844,25755103,18621668,37755230

38AD697B6C9967B8BD7496E31264A21F6D0A9DEE

Page visits: 5145

Time of last update: 2024-10-10 00:49:54

Author of last update: Jstuelk