ydjP

ydjP
168

similar to chloroperoxydase

locus
BSU_06280
Molecular weight
30.36 kDa
pI
4.62
Protein length
Gene length
function
unknown
product
unknown
essential
no
synonyms
ydjP

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0596 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
681,547  682,362
The protein
Protein family
[wiki|AB hydrolase superfamily] (according to UniProt)
[wiki|Domains]
[wiki|AB hydrolase-1 domain] (aa 23-257) (according to InterPro)
Structure
[PDB|4RNC] (from ''Rhodococcus sp.'', 28%(low identity!!!)
[AF|O34592]
Paralogous protein(s)
[protein|AD4702CC69AC7D5FF391F14176881D582DD1C68A|yvaM], (39,4%)
Expression and Regulation
Operons
genes
[gene|D30ADD18D86E153482FE2BFC621230FEE5912BF9|yeaA]-[gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]-[gene|1F845CE702BCD10F4DB596E438CE9DB076806B1D|ydjO]
description
[Pubmed|9987136]
regulation
induced by cold shock [Pubmed|12399512]
sigma factors
[protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|sigW]: sigma factor, [Pubmed|9987136], in [regulon|protein:3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|sigW regulon]
[protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE]: sigma factor, [Pubmed|15699190], in [regulon|protein:3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE regulon]
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[gene|D30ADD18D86E153482FE2BFC621230FEE5912BF9|yeaA]→[gene|1F845CE702BCD10F4DB596E438CE9DB076806B1D|ydjO]

2024-09-29 19:37:31

ghost

64

69b4a8a8975251d2644147dee3ded74be721d269

83AF9E82C2674691FBAD665EB4D5EE83F16B95AA

Biological materials
Mutant
MGNA-C223 (ydjP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2221 NBRP B. subtilis, Japan]
BKE06280 ([gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE06280 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCTCCTCCTTTAGT,  downstream forward: _UP4_TAAAGAAAAAGGAATTAGGA
BKK06280 ([gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK06280 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCTCCTCCTTTAGT,  downstream forward: _UP4_TAAAGAAAAAGGAATTAGGA
References
9987136

322BE299860795A70EFA78B8E2614CCCC1CE7C87

Page visits: 2038

Time of last update: 2024-10-04 17:53:01

Author of last update: Melvin.boenninger