ydjP
168
similar to chloroperoxydase
locus
BSU_06280
Molecular weight
30.36 kDa
pI
4.62
function
unknown
product
unknown
essential
no
synonyms
ydjP
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0596 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
681,547 682,362
The protein
Protein family
[wiki|AB hydrolase superfamily] (according to UniProt)
[wiki|Domains]
[wiki|AB hydrolase-1 domain] (aa 23-257) (according to InterPro)
Structure
[PDB|4RNC] (from ''Rhodococcus sp.'', 28%(low identity!!!)
[AF|O34592]
Paralogous protein(s)
[protein|AD4702CC69AC7D5FF391F14176881D582DD1C68A|yvaM], (39,4%)
Expression and Regulation
Operons
genes
[gene|D30ADD18D86E153482FE2BFC621230FEE5912BF9|yeaA]-[gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]-[gene|1F845CE702BCD10F4DB596E438CE9DB076806B1D|ydjO]
description
[Pubmed|9987136]
regulation
induced by cold shock [Pubmed|12399512]
sigma factors
[protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|sigW]: sigma factor, [Pubmed|9987136], in [regulon|protein:3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|sigW regulon]
[protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE]: sigma factor, [Pubmed|15699190], in [regulon|protein:3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE regulon]
Biological materials
Mutant
MGNA-C223 (ydjP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2221 NBRP B. subtilis, Japan]
BKE06280 ([gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE06280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCTCCTCCTTTAGT, downstream forward: _UP4_TAAAGAAAAAGGAATTAGGA
BKK06280 ([gene|322BE299860795A70EFA78B8E2614CCCC1CE7C87|ydjP]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK06280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTCTCCTCCTTTAGT, downstream forward: _UP4_TAAAGAAAAAGGAATTAGGA
References
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Time of last update: 2024-12-19 21:55:10
Author of last update: Melvin.boenninger