yqjB
168
putative sporulation-specific L,D-transpeptidase
locus
BSU_23940
Molecular weight
19.55 kDa
pI
5.27
function
unknown
product
putative L,D-transpeptidase
essential
no
synonyms
yqjB
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1376 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
2,488,953 2,489,483
The protein
Protein family
YkuD family (with [protein|456AF184261976FAA73359E81443F7035F457D07|yciB] and [protein|6F256986E591DB82974A7F54EB1CE0C024A6F63B|ldt], according to UniProt)
Structure
[PDB|4A1I] ([protein|6F256986E591DB82974A7F54EB1CE0C024A6F63B|ldt], 41% identity)
[AF|P54539]
Paralogous protein(s)
[protein|6F256986E591DB82974A7F54EB1CE0C024A6F63B|ldt]
[wiki|Localization]
contains a signal peptide for secretion (according to UniProt)
Expression and Regulation
Operons
genes
[gene|293794B65B9EEB7F049138F73893303BABFB9A2A|yqjB]-[gene|E993FA7270DB71B055A36E305D8759BFD4C21ACF|yqjC]
description
[pubmed|22383849]
regulatory mechanism
[protein|01EF886D3D004EA9B22AC5E75D50FF07D8631E68|spoVT]: repression, [pubmed|26577401], in [regulon|protein:01EF886D3D004EA9B22AC5E75D50FF07D8631E68|spoVT regulon]
sigma factors
[protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|sigG]: sigma factor, [pubmed|26577401], in [regulon|protein:5F24258282F3166B7696B9E9ABC1706E4D06C944|sigG regulon]
Biological materials
Mutant
MGNA-C385 (yqjB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2383 NBRP B. subtilis, Japan]
BKE23940 ([gene|293794B65B9EEB7F049138F73893303BABFB9A2A|yqjB]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE23940 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAGCTCCTCCTTTTTCA, downstream forward: _UP4_TAAGGCGCCTGCTTTTTTAT
BKK23940 ([gene|293794B65B9EEB7F049138F73893303BABFB9A2A|yqjB]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK23940 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAAGCTCCTCCTTTTTCA, downstream forward: _UP4_TAAGGCGCCTGCTTTTTTAT
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Time of last update: 2024-10-04 17:54:29
Author of last update: Jstuelk