xtmB

xtmB
168

PBSX terminase (large subunit)

locus
BSU_12580
Molecular weight
50.99 kDa
pI
8.87
Protein length
Gene length
function
phage DNA replication
product
PBSX terminase (large subunit)
essential
no
ec
null
synonyms
xtmB, ykxG

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1783 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,325,890  1,327,191
The protein
Structure
[PDB|4IFE] (from Shigella phage, corresponds to aa 6 ... 225, 27% identity) [pubmed|23630261]
[AF|P39786]
Expression and Regulation
Operons
genes
[gene|DD4F52FE386EF75009ECF594ED4E2D1593220E4F|xtmA]-[gene|277F51EB4FE2BAB0FD1808EDE25705E10833AD0A|xtmB]-[gene|E77DD93E3CDCA9B81106E6AB0F18513360AAE9DB|xkdE]-[gene|6542BE447872C1A16C056DA21BD7A23C65F5C543|xkdF]-[gene|38173C76C27A7178CEE66E3642533EB34828C2CB|xkdG]-[gene|81C6812565B3E8ADCB19F52BDFFA9E55B94A2E9D|xkdH]-[gene|5ACCC439AD8849355094F8C5FC6EF29A9077EF58|xkdI]-[gene|6DF19E4546509687CA194F6B44EEB723C9467B9C|xkdJ]-[gene|31B1832E5EAD957EE6A5C7CB0C117EC0F26AA8AB|xkdK]-[gene|683D350D98AC0D27951145AD87830B89C0B4F393|xkdM]-[gene|0BF8AD1ACD0BBA6913636081B41E6D04D16D1BA2|xkdN]-[gene|156A8B699B32B268EBA1A0A1620C95D0DF630A4E|xkzB]-[gene|CD97483876F4FCCE451AD4F2A8AFD6F560074769|xkdO]-[gene|ED35852FAAD386CFB43F8D3DDEF28F7B05EC8B43|xkdP]-[gene|D5FDCC792D0E6B8D35BCDDC0D7B76025ACC900FF|xkdQ]-[gene|AF9706F2EBF056A404B5D7640D78D1E833805225|xkdR]-[gene|C222F247C225FD6DEBB103DFB169AEF87DFC0C0D|xkdS]-[gene|1234C9BC164FB47E003009E943124982260221C0|xkdT]-[gene|BDE032590D5F3504CDB4D6BD545153D681B65ADD|xkdU]-[gene|3BCF7587145CFEDEA2F36512ABF62D6B6A2886C5|xkzA]-[gene|9FAAA2E63B161862396C47CE5D1EA9191847FDAD|xkdV]-[gene|1F152F97AD20DABAC1D83EDC2177F46EAECC562C|xkdW]-[gene|787561F433911D090F801AD493F688895498542F|xkdX]-[gene|27BB6659541BA5368DEDB19EADCD372CE41244F5|xepA]-[gene|630FC0D9BDD243D6BF94DBDE506EC2A9CB0AAFE6|xhlA]-[gene|360D866E939DDB822AFAC589D563B191A88695CD|xhlB]-[gene|50D7B97E4D3D41F74EF1942B85DE1DA4A33BEBB0|xlyA]
description
[Pubmed|22383849,2110147]
regulation
expression during spore [wiki|germination] is strongly reduced under conditions of osmotic stress [Pubmed|27766092]
sigma factors
[protein|458406A4E6824C24493CFC19718F10720AA3B453|xpf]: sigma factor, [Pubmed|8083174], in [regulon|protein:458406A4E6824C24493CFC19718F10720AA3B453|xpf regulon]
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[gene|DD4F52FE386EF75009ECF594ED4E2D1593220E4F|xtmA]→[gene|50D7B97E4D3D41F74EF1942B85DE1DA4A33BEBB0|xlyA]

2024-10-08 16:48:13

Jstuelk

121

cf834a1eded0c80a87b885b56423c31a910431c3

B52CA80EBED69B6B9017B7E04DFFD42F17910C15

Biological materials
Mutant
BKE12580 ([gene|277F51EB4FE2BAB0FD1808EDE25705E10833AD0A|xtmB]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE12580 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_ATGAGGGTTGATTTCTTTTA,  downstream forward: _UP4_CGAGAAAGGAGGAGGTCATA
BKK12580 ([gene|277F51EB4FE2BAB0FD1808EDE25705E10833AD0A|xtmB]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK12580 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_ATGAGGGTTGATTTCTTTTA,  downstream forward: _UP4_CGAGAAAGGAGGAGGTCATA
References
2110147,8083174,23630261

277F51EB4FE2BAB0FD1808EDE25705E10833AD0A

Page visits: 2003

Time of last update: 2024-10-10 12:37:54

Author of last update: Jstuelk