jag

jag
168

[protein|D40C202E67A5319A91811DB11356F47A56C97DD2|yidC1]-associated protein, similar to cell elongation regulator, similar to RNA-binding protein KhpB (from Streptococcus pneumoniae and Clostridium difficile)

locus
BSU_41030
Molecular weight
23.02 kDa
pI
10.04
Protein length
Gene length
function
unknown
product
[protein|D40C202E67A5319A91811DB11356F47A56C97DD2|yidC1]-associated protein
essential
no
synonyms
jag, khpB

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1847 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
4,213,200  4,213,826
The protein
[wiki|Domains]
[wiki|KH domain] (aa 91-140) (according to UniProt)
R3H domain (aa 140-208) (according to UniProt)
Structure
[PDB|3GKU] (from Clostridium symbiosum, 40% identity)
[AF|Q01620]
Expression and Regulation
Operons
genes
[gene|EB07AECD3849CC0B65126DE27E71B28B3AD106B0|rpmH]-[gene|594F2D36BE71A45303A33AA2A2931F56F0A969ED|rnpA]-[gene|D40C202E67A5319A91811DB11356F47A56C97DD2|yidC1]-[gene|23D33E2D7AB1CA02165070DB8238957E3C768E64|jag]
description
[Pubmed|22383849]
regulation
expression is reduced in motile cells as compared to non-motile cells [pubmed|33782055]
Open in new tab

[gene|EB07AECD3849CC0B65126DE27E71B28B3AD106B0|rpmH]→[gene|23D33E2D7AB1CA02165070DB8238957E3C768E64|jag]

2024-10-05 03:47:45

Jstuelk

119

E083541B5FC7B773C237692E19D8D077A360C15A

091CC69B9E971C4FEAD3C4AEC4A1CDFAE7D6AF75

genes
[gene|D40C202E67A5319A91811DB11356F47A56C97DD2|yidC1]-[gene|23D33E2D7AB1CA02165070DB8238957E3C768E64|jag]
description
[Pubmed|1487728]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|1487728], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
additional information
An antisense RNA is predicted for '[protein|search|jag]' [PubMed|20525796]
Open in new tab

[gene|D40C202E67A5319A91811DB11356F47A56C97DD2|yidC1]→[gene|23D33E2D7AB1CA02165070DB8238957E3C768E64|jag]

2024-09-29 19:31:27

ghost

96

76bc1afeca550418bdb4c6820a355bd03440f359

4F1FB76953A40B452D757ABD009F8008F6D2692D

additional information
the mRNA is cleaved by [protein|BAB297D18F94FFA67B8D12A684AB4D1BCDFB4981|RNase III] [PubMed|26883633]
Biological materials
Mutant
MGNA-B878 (jag::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1877 NBRP B. subtilis, Japan]
BKE41030 ([gene|23D33E2D7AB1CA02165070DB8238957E3C768E64|jag]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE41030 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CCTCACTTTTTCTTTCCTCC,  downstream forward: _UP4_TAGCATAAAACCGAAGTCCG
BKK41030 ([gene|23D33E2D7AB1CA02165070DB8238957E3C768E64|jag]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK41030 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CCTCACTTTTTCTTTCCTCC,  downstream forward: _UP4_TAGCATAAAACCGAAGTCCG
Reviews
34748246,35638784
References
1487728,20525796,28710862,26883633

23D33E2D7AB1CA02165070DB8238957E3C768E64

Page visits: 3540

Time of last update: 2024-10-04 18:52:30

Author of last update: Jstuelk