ywkB
168
unknown
locus
BSU_37040
Molecular weight
33.49 kDa
pI
7.11
function
unknown
product
unknown
essential
no
ec
null
synonyms
ywkB
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0679 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
3,799,377 3,800,336
The protein
Protein family
auxin efflux carrier (TC 2.A.69) family (single member, according to UniProt)
Structure
[AF|P45869]
[wiki|Localization]
cell membrane (according to UniProt)
Expression and Regulation
Operons
genes
[gene|4F30A4412768E6313F57BD56C4EF5079F500E0C4|maeA]-[gene|1E602BCB2A416CDBF2B5007765EC9628123FE979|ywkB]
description
[Pubmed|12949160]
regulation
expressed in the presence of malate ([protein|search|MalR]) [Pubmed|12949160]
regulatory mechanism
[protein|689CF50691E77E5A40437EF1E6B5083AF7CFCE08|malR]: activation, [Pubmed|12949160], in [regulon|protein:689CF50691E77E5A40437EF1E6B5083AF7CFCE08|malR regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|12949160], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
additional information
the mRNA is substantially stabilized upon depletion of [gene|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] [PubMed|21815947]
Biological materials
Mutant
MGNA-B656 (ywkB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1655 NBRP B. subtilis, Japan]
BKE37040 ([gene|1E602BCB2A416CDBF2B5007765EC9628123FE979|ywkB]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE37040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAATATTCTCCTCCAAAT, downstream forward: _UP4_TAACAAAAAAAGCTCCCTTT
BKK37040 ([gene|1E602BCB2A416CDBF2B5007765EC9628123FE979|ywkB]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK37040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAATATTCTCCTCCAAAT, downstream forward: _UP4_TAACAAAAAAAGCTCCCTTT
References
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Time of last update: 2024-12-20 15:07:44
Author of last update: Melvin.boenninger