ydjM
168
member of the [regulon|protein:7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR regulon], putative cell wall hydrolase (N-acetylglucosamidase)
locus
BSU_06250
Molecular weight
13.04 kDa
pI
10.57
function
may be involved in cell wall metabolism ([regulon|protein:7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR regulon])
product
unknown
essential
no
synonyms
ydjM, yzvA
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms
This gene is a member of the following regulons
Gene
Coordinates
679,390 679,761
The protein
Structure
[AF|P40775]
[wiki|Localization]
extracellular (signal peptide) [Pubmed|20709850]
Expression and Regulation
Operons
genes
[gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]
description
[Pubmed|22383849]
regulation
activated by [protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR] [Pubmed|17581128]
regulatory mechanism
[protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR]: activation, [Pubmed|17581128], in [regulon|protein:7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR regulon]
[protein|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP]: activation, [Pubmed|20059685], in [regulon|protein:638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP regulon]
additional information
the terminator is [protein|8887ADC77C43F21CD375BDAA4D38E940786DAD4F|nusA]-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]
genes
[gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]-[gene|6B93DA610D4D86A5D4E53190999FB0E4E10AE8E5|ydjN]
description
[Pubmed|22383849]
regulation
activated by [protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR] [Pubmed|17581128]
regulatory mechanism
[protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR]: activation, [pubmed|17581128], in [regulon|protein:7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR regulon]
[protein|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP]: activation, [pubmed|20059685], in [regulon|protein:638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP regulon]
additional information
the terminator is [protein|8887ADC77C43F21CD375BDAA4D38E940786DAD4F|nusA]-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]
Biological materials
Mutant
MGNA-C220 (ydjM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2218 NBRP B. subtilis, Japan]
BKE06250 ([gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE06250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT, downstream forward: _UP4_TAATGTACATATATAATCTG
BKK06250 ([gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK06250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT, downstream forward: _UP4_TAATGTACATATATAATCTG
References
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Time of last update: 2024-12-20 20:44:25
Author of last update: Jstuelk