ydjM

ydjM
168

member of the [regulon|protein:7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR regulon], putative cell wall hydrolase (N-acetylglucosamidase)

locus
BSU_06250
Molecular weight
13.04 kDa
pI
10.57
Protein length
Gene length
function
may be involved in cell wall metabolism ([regulon|protein:7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR regulon])
product
unknown
essential
no
synonyms
ydjM, yzvA

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms

This gene is a member of the following regulons

Gene
Coordinates
679,390  679,761
The protein
Structure
[AF|P40775]
[wiki|Localization]
extracellular (signal peptide) [Pubmed|20709850]
Expression and Regulation
Operons
genes
[gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]
description
[Pubmed|22383849]
regulation
activated by [protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR] [Pubmed|17581128]
regulatory mechanism
[protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR]: activation, [Pubmed|17581128], in [regulon|protein:7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR regulon]
[protein|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP]: activation, [Pubmed|20059685], in [regulon|protein:638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP regulon]
additional information
the terminator is [protein|8887ADC77C43F21CD375BDAA4D38E940786DAD4F|nusA]-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]
Open in new tab

[gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]

2024-08-27 19:59:49

Jstuelk

61

8ea7bc69af6b28234540eab35e438a93cafe2853

425DDFA2547C846C7A78E2054F385936E67D1629

genes
[gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]-[gene|6B93DA610D4D86A5D4E53190999FB0E4E10AE8E5|ydjN]
description
[Pubmed|22383849]
regulation
activated by [protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR] [Pubmed|17581128]
regulatory mechanism
[protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR]: activation, [pubmed|17581128], in [regulon|protein:7F340423A34CE40D1F1AA8D373F7C4B859A6496D|walR regulon]
[protein|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP]: activation, [pubmed|20059685], in [regulon|protein:638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|phoP regulon]
additional information
the terminator is [protein|8887ADC77C43F21CD375BDAA4D38E940786DAD4F|nusA]-dependent [ http://www.nature.com/articles/nmicrobiol20157 Reference]
Open in new tab

[gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]→[gene|6B93DA610D4D86A5D4E53190999FB0E4E10AE8E5|ydjN]

2024-10-14 08:31:03

Jstuelk

77

52dca7f5f44c41b5557fd6823bf3479867452aa9

F613F02B643EAFF493BD67F728898A8E20BB74C9

Biological materials
Mutant
MGNA-C220 (ydjM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2218 NBRP B. subtilis, Japan]
BKE06250 ([gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE06250 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT,  downstream forward: _UP4_TAATGTACATATATAATCTG
BKK06250 ([gene|18ED48E99D87748B2EBD6001EFDF1D3D91535ABF|ydjM]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK06250 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATTTCGTCCCCCTGTTTGT,  downstream forward: _UP4_TAATGTACATATATAATCTG
References
17581128,20059685,20709850,23199363

18ED48E99D87748B2EBD6001EFDF1D3D91535ABF

Page visits: 2693

Time of last update: 2024-10-14 04:36:43

Author of last update: Jstuelk