yoaJ
168
bacterial expansin, binds cellulose, required for the colonization of maize roots, putative cell wall hydrolase (N-acetylglucosamidase)
locus
BSU_18630
Molecular weight
25.49 kDa
pI
9.45
function
interaction with plant roots
product
expansin
essential
no
synonyms
yoaJ, EXLX1
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG4305 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
2,032,927 2,033,625
Phenotypes of a mutant
strongly reduced ability to colonize maize roots [Pubmed|18971341]
The protein
Protein family
expansin [Pubmed|18971341]
[wiki|Domains]
Expansin-like EG45 domain (aa 58-127) (according to UniProt)
Structure
[PDB|3D30] [Pubmed|18971341]
[AF|O34918]
[wiki|Localization]
extracellular [Pubmed|18971341]
Expression and Regulation
Operons
genes
[gene|17094CBA2DDFB82B5FC064AADB85DAB60A15B2C0|yoaJ]
description
[Pubmed|12354229]
regulation
induced upon iron starvation ([protein|search|Fur]) [Pubmed|12354229]
regulatory mechanism
[protein|F899F1EE27E6D503BCC06BC52E3C7FD80B8EF725|fur]: repression, [pubmed|12354229], in [regulon|protein:F899F1EE27E6D503BCC06BC52E3C7FD80B8EF725|fur regulon]
Biological materials
Mutant
MGNA-A839 (yoaJ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/839 NBRP B. subtilis, Japan]
BKE18630 ([gene|17094CBA2DDFB82B5FC064AADB85DAB60A15B2C0|yoaJ]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE18630 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTGGTCCTCCTCAAA, downstream forward: _UP4_TAAAAAATACGAAACAGCGG
BKK18630 ([gene|17094CBA2DDFB82B5FC064AADB85DAB60A15B2C0|yoaJ]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK18630 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTGGTCCTCCTCAAA, downstream forward: _UP4_TAAAAAATACGAAACAGCGG
References
Reviews
Original Publications
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Time of last update: 2024-12-07 01:39:49
Author of last update: Jstuelk