ynbB

ynbB
168

putative C-S lyase, required for [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|efp] modification

locus
BSU_17440
Molecular weight
45.91 kDa
pI
5.09
Protein length
Gene length
function
modification of [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|efp]
product
putative C-S lyase
essential
no
synonyms
ynbB

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG4100 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
1,876,584  1,877,849
Phenotypes of a mutant
inactivation suppresses the swarming defect of a [gene|248F0805272FED9B38ECBB31E2872BC9EC163CE0|ymfI] mutant [pubmed|29615499]
defective in [category|SW.4.1.4|Swarming] motility [pubmed|35638827]
The protein
[wiki|Cofactors]
PLP (according to UniProt)
Structure
[PDB|3JZL] (from ''Listeria monocytogenes str. 4b f2365'', 67% identity, 80% similarity) [Pubmed|15770647], [protein|search|3HT4] (from Bacillus Cereus, 99% indentity)
[AF|P94479]
Expression and Regulation
Operons
genes
[gene|9F6B78C1932FB56F7F71430DB16BC862A312407B|ynbA]-[gene|14EFA3BF4E5DD5368EF02B0733300CEF7A4E0DC7|ynbB]-[gene|641C4BDD9702804642E1753A9C779E80FABB3919|glnR]-[gene|68F4E792B99F86AE9E8F06D2200E128937331F5D|glnA]
description
[Pubmed|22383849]
regulation
the mRNA is processed between [gene|641C4BDD9702804642E1753A9C779E80FABB3919|glnR] and [gene|68F4E792B99F86AE9E8F06D2200E128937331F5D|glnA] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|ricA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|ricF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|ricT] complex [Pubmed|29794222]
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[gene|9F6B78C1932FB56F7F71430DB16BC862A312407B|ynbA]→[gene|68F4E792B99F86AE9E8F06D2200E128937331F5D|glnA]

2024-12-05 10:02:42

Jstuelk

107

d45811f6bc7bef80a041d78aaa209f36dccdee6a

2408FECBCAE7255480B230470AF58DDA9F084F5A

Biological materials
Mutant
MGNA-B092 (ynbB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1091 NBRP B. subtilis, Japan]
BKE17440 ([gene|14EFA3BF4E5DD5368EF02B0733300CEF7A4E0DC7|ynbB]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE17440 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_AAACATGTCTTTATATTTCC,  downstream forward: _UP4_TAAATTTTTTAAAAATTTCT
BKK17440 ([gene|14EFA3BF4E5DD5368EF02B0733300CEF7A4E0DC7|ynbB]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK17440 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_AAACATGTCTTTATATTTCC,  downstream forward: _UP4_TAAATTTTTTAAAAATTTCT
References
Research papers
29615499,35638827

14EFA3BF4E5DD5368EF02B0733300CEF7A4E0DC7

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Time of last update: 2024-12-05 10:02:25

Author of last update: Jstuelk