yodT
168
similar to adenosylmethionine-8-amino-7-oxononanoate aminotransferase
locus
BSU_19740
Molecular weight
48.25 kDa
pI
5.96
function
unknown
product
unknown
essential
no
synonyms
yodT
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0161 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
2,144,356 → 2,145,690
The protein
Protein family
[wiki|Class-III pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)
[wiki|Cofactors]
PLP (according to UniProt)
Structure
[PDB|3I4J] (from Deinococcus Radiodurans 39% identity)
[AF|O34662]
Paralogous protein(s)
[protein|E5F6DF14A4C01B2C90F70E37908D3697BC1B5FEF|yhxA], (34,9%)
Expression and Regulation
Operons
genes
[gene|13DC4296015A28975BC7697F134FB6ECD6B11489|yodT]-[gene|D8A050BF150C6E5B910C24C0E023F0829EC95BAD|yodS]-[gene|138832210AC94B17E081F3D0AF9BCFE3BE63E601|yodR]-[gene|161ADC907D4902001C8751F51CFA762828C26110|yodQ]-[gene|39749B5EADC3C056BAF232E0B586C65B989F7F77|yodP]-[gene|21589FEBDE54C66DE2A3DCFC2D7BF3AEEC84B44C|kamA]-[gene|A4A099EE3368891C2AD6C2D1DCBE7B238227417F|yokU]-[gene|0A33869E05CC9B49699555EA19D0905A55CA35B9|yozE]
description
[Pubmed|22383849,14523133]
regulation
expressed early during sporuation in the mother cell ([protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE]) [Pubmed|14523133]
sigma factors
[protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE]: sigma factor, [Pubmed|14523133], in [regulon|protein:3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE regulon]
additional information
translation is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]
Biological materials
Mutant
MGNA-B508 (yodT::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1507 NBRP B. subtilis, Japan]
BKE19740 (Δ[gene|13DC4296015A28975BC7697F134FB6ECD6B11489|yodT]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE19740 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCTCCCACCTCAAAACC, downstream forward: _UP4_AACTTAAAAAAGGATTGACA
BKK19740 (Δ[gene|13DC4296015A28975BC7697F134FB6ECD6B11489|yodT]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK19740 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCTCCCACCTCAAAACC, downstream forward: _UP4_AACTTAAAAAAGGATTGACA
References
Page visits: 3494
Time of last update: 2024-12-22 03:01:28
Author of last update: Jstuelk