yodR
168
similar to butyrate-acetoacetate CoA-transferase
locus
BSU_19720
Molecular weight
23.19 kDa
pI
6.11
function
unknown
product
unknown
essential
no
ec
2.8.3.9
synonyms
yodR
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG2057 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
2,143,022 2,143,675
The protein
Protein family
3-oxoacid CoA-transferase subunit B family (with [protein|7F46EDA8F1EB8D9817C62D7D361FF32F9CD814AD|scoB], according to UniProt)
Structure
[PDB|3CDK] (the [protein|A7E61C3D12BBDDD3EFD65B1EDBE280497D7B6CD0|scoA]-[protein|7F46EDA8F1EB8D9817C62D7D361FF32F9CD814AD|scoB] complex) (51% identity)
[AF|O34466]
Paralogous protein(s)
[protein|7F46EDA8F1EB8D9817C62D7D361FF32F9CD814AD|scoB]
Expression and Regulation
Operons
genes
[gene|13DC4296015A28975BC7697F134FB6ECD6B11489|yodT]-[gene|D8A050BF150C6E5B910C24C0E023F0829EC95BAD|yodS]-[gene|138832210AC94B17E081F3D0AF9BCFE3BE63E601|yodR]-[gene|161ADC907D4902001C8751F51CFA762828C26110|yodQ]-[gene|39749B5EADC3C056BAF232E0B586C65B989F7F77|yodP]-[gene|21589FEBDE54C66DE2A3DCFC2D7BF3AEEC84B44C|kamA]-[gene|A4A099EE3368891C2AD6C2D1DCBE7B238227417F|yokU]-[gene|0A33869E05CC9B49699555EA19D0905A55CA35B9|yozE]
description
[Pubmed|22383849,14523133]
regulation
expressed early during sporuation in the mother cell ([protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE]) [Pubmed|14523133]
sigma factors
[protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE]: sigma factor, [Pubmed|14523133], in [regulon|protein:3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE regulon]
Biological materials
Mutant
MGNA-B506 (yodR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1505 NBRP B. subtilis, Japan]
BKE19720 ([gene|138832210AC94B17E081F3D0AF9BCFE3BE63E601|yodR]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE19720 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTTGCAATCTGTTCTCTTT, downstream forward: _UP4_ATGCCTTTTTCTTAAGAGGG
BKK19720 ([gene|138832210AC94B17E081F3D0AF9BCFE3BE63E601|yodR]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK19720 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTTGCAATCTGTTCTCTTT, downstream forward: _UP4_ATGCCTTTTTCTTAAGAGGG
References
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Time of last update: 2024-12-30 06:44:08
Author of last update: Melvin.boenninger