ypsC

ypsC
168

similar to SAM-dependent 23S rRNA methyltransferase

locus
BSU_22170
Molecular weight
43.35 kDa
pI
8.01
Protein length
385 aaSequenceBlast
Gene length
1158 bpSequenceBlast
function
rRNA modification
product
23S rRNA methyltransferase
essential
no
synonyms
ypsC
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG0116 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
2,330,075  2,331,232
The protein
Protein family
[wiki|Methyltransferase superfamily] (according to UniProt)
[wiki|Domains]
THUMP domain (aa 44-156) (according to UniProt)
Structure
[PDB|3K0B] (from Listeria monocytogenes, 63% identity)
[AF|P50840]
Expression and Regulation
Operons
genes
[gene|C22F7704DC9D36D96FE089ADCEA546D7A3FB3739|gpsB]-[gene|57A79AAF00243B5E058FA901D43AA7B55CA33F63|rnpB]-[gene|0DF27BEAF763545258CE7DD56F65CD5BF74DD887|ypsC]
description
[Pubmed|22383849]
Open in new tab

[gene|C22F7704DC9D36D96FE089ADCEA546D7A3FB3739|gpsB]→[gene|0DF27BEAF763545258CE7DD56F65CD5BF74DD887|ypsC]

2024-12-21 13:09:19

Jstuelk

99

8fcfca7cc774f7208694093f3eb33cc2d7e072e9

2C2BA652C53582B304B290D6B627337B746C0EDC

genes
[gene|57A79AAF00243B5E058FA901D43AA7B55CA33F63|rnpB]-[gene|0DF27BEAF763545258CE7DD56F65CD5BF74DD887|ypsC]
description
[Pubmed|22383849]
Open in new tab

[gene|57A79AAF00243B5E058FA901D43AA7B55CA33F63|rnpB]→[gene|0DF27BEAF763545258CE7DD56F65CD5BF74DD887|ypsC]

2024-11-16 03:14:50

Jstuelk

80

c4e04800212f758ea89de5ad1ce201d4b4e5d157

9ACE8ABB3AE3C4F91EC780F28948BB245F110A31

Biological materials
Mutant
MGNA-A416 (ypsC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/416 NBRP B. subtilis, Japan]
BKE22170 ([gene|0DF27BEAF763545258CE7DD56F65CD5BF74DD887|ypsC]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE22170 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCGTATCACCCTGTCTTT,  downstream forward: _UP4_TAAAAAGAAGACGCTCTGCA
BKK22170 ([gene|0DF27BEAF763545258CE7DD56F65CD5BF74DD887|ypsC]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK22170 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCGTATCACCCTGTCTTT,  downstream forward: _UP4_TAAAAAGAAGACGCTCTGCA
two-hybrid system
B. pertussis adenylate cyclase-based bacterial two hybrid system ([wiki|BACTH]), available in [wiki|Fabian Commichau]'s lab
References
17010378,21710567

0DF27BEAF763545258CE7DD56F65CD5BF74DD887

Page visits: 1993

Time of last update: 2024-12-22 00:18:31

Author of last update: Melvin.boenninger