ydgC
168
similar to transcription factor ([wiki|TetR family])
locus
BSU_05580
Molecular weight
21.92 kDa
pI
5.57
function
unknown
product
unknown
essential
no
synonyms
ydgC
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG1309 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
603,012 603,599
The protein
Protein family
[wiki|TetR family]
[wiki|Domains]
[wiki|HTH tetR-type domain] (aa 6-66) (according to UniProt)
Structure
[PDB|5GPA] ([protein|8A8F93BAD0582F712C9EE1C3FE6C04292E91F390|fadR] from B. halodurans, 26% identity)
[AF|P96701]
Expression and Regulation
Operons
genes
[gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]-[gene|6DD46B2E342994CB97C13C00AB264B2D62184223|ydgD]-[gene|07A30814F57112196051289AA309AE6DB22CAEFF|ydgE]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-C157 (ydgC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2155 NBRP B. subtilis, Japan]
BKE05580 ([gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE05580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTAGGACCACCCCAAAA, downstream forward: _UP4_CTTCCGAAAGGGAATGATGT
BKK05580 ([gene|0C2CD998B933D7458DBC4E80A596801274AC43F9|ydgC]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK05580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTAGGACCACCCCAAAA, downstream forward: _UP4_CTTCCGAAAGGGAATGATGT
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Time of last update: 2025-01-08 07:58:07
Author of last update: Melvin.boenninger