melD

melD
168

[wiki|ABC transporter] subunit for melibiose and raffinose (permease)

locus
BSU_30280
Molecular weight
34.01 kDa
pI
9.08
Protein length
Gene length
function
uptake of melibiose and raffinose
product
[wiki|ABC transporter] (permease)
essential
no
synonyms
melD, amyD

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG1175 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
3,099,123  3,100,034
The protein
Protein family
[wiki|Binding-protein-dependent transport system permease family] (according to UniProt)
[wiki|Domains]
[wiki|ABC transmembrane type-1 domain] (aa 79-291) (according to UniProt)
Structure
[PDB|4TQU] (from Sphingomonas sp., 30% identity) [pubmed|26235029]
[AF|O34706]
[wiki|Localization]
cell membrane [Pubmed|10092453]
Expression and Regulation
Operons
genes
[gene|C3D7C64AD0E58BF326257E23136466A237138B50|melE]-[gene|05BFEA711D82395A55B505E5A38286BE2F570350|melD]-[gene|4E766839240C8F7D56D87DF9E7B99350A83B5FF7|melC]-[gene|CDE9EF9CFB799794D525F12DEC8C4190C6298575|melA]
description
[Pubmed|22383849]
regulation
repressed by glucose ([protein|search|CcpA]) [Pubmed|22900538]
Open in new tab

[gene|C3D7C64AD0E58BF326257E23136466A237138B50|melE]→[gene|CDE9EF9CFB799794D525F12DEC8C4190C6298575|melA]

2024-11-25 01:01:43

ghost

71

847594f17f75304119fc4e01c75357cb3be0099d

6C880CEB4C8A523152A9E2F2B771FB0BEA14B117

genes
[gene|58276E6FEF9388BBC7FB79BB5A3A1EF3C3DA5BD5|melR]-[gene|C3D7C64AD0E58BF326257E23136466A237138B50|melE]-[gene|05BFEA711D82395A55B505E5A38286BE2F570350|melD]-[gene|4E766839240C8F7D56D87DF9E7B99350A83B5FF7|melC]-[gene|CDE9EF9CFB799794D525F12DEC8C4190C6298575|melA]
description
[Pubmed|22383849]
regulation
repressed by glucose ([protein|search|CcpA]) [Pubmed|22900538]
regulatory mechanism
[protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA]: repression, [Pubmed|22900538], in [regulon|protein:E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|ccpA regulon]
[protein|58276E6FEF9388BBC7FB79BB5A3A1EF3C3DA5BD5|melR]: repression, [pubmed|31138628], in [regulon|protein:58276E6FEF9388BBC7FB79BB5A3A1EF3C3DA5BD5|melR regulon]
sigma factors
[protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|22900538,31138628], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]
Open in new tab

[gene|58276E6FEF9388BBC7FB79BB5A3A1EF3C3DA5BD5|melR]→[gene|CDE9EF9CFB799794D525F12DEC8C4190C6298575|melA]

2024-11-19 23:45:36

ghost

69

a76a3bd8bbf487172d83c078a68b2450f4f95213

AB0F662445BB81BBCFC1971F2E98536D4BBE6D03

Biological materials
Mutant
MGNA-A799 (amyD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/799 NBRP B. subtilis, Japan]
BKE30280 ([gene|05BFEA711D82395A55B505E5A38286BE2F570350|melD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE30280 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_TTTCACATGAACGTCCCTTG,  downstream forward: _UP4_AAAAGAAAGGAGACGGAAAT
BKK30280 ([gene|05BFEA711D82395A55B505E5A38286BE2F570350|melD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK30280 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_TTTCACATGAACGTCCCTTG,  downstream forward: _UP4_AAAAGAAAGGAGACGGAAAT
References
36815589,10092453,22383849,22900538,26235029,31138628,39397791

05BFEA711D82395A55B505E5A38286BE2F570350

Page visits: 3321

Time of last update: 2024-12-05 18:34:44

Author of last update: Jstuelk