yhdW
168
similar to glycerophosphodiester phosphodiesterase
locus
BSU_09620
Molecular weight
27.33 kDa
pI
9.54
function
unknown
product
unknown
essential
no
synonyms
yhdW
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG0584 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
1,037,688 1,038,419
The protein
Catalyzed reaction/ biological activity
sn-glycero-3-phosphoester + H2O --> alcohol + H+ + sn-glycerol 3-phosphate (according to UniProt)
Protein family
glycerophosphoryl diester phosphodiesterase family (with [protein|E9BEF368F8E55888AD4849E8906E517831A882DF|glpQ], according to UniProt)
[wiki|Domains]
GP-PDE domain (aa 1-238) (according to UniProt)
Structure
[PDB|5T9B] ([protein|E9BEF368F8E55888AD4849E8906E517831A882DF|glpQ], 38% identity) [pubmed|27780866]
[AF|O07592]
Paralogous protein(s)
[protein|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK], [protein|E9BEF368F8E55888AD4849E8906E517831A882DF|glpQ]
Expression and Regulation
Operons
genes
[gene|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]-[gene|BD1C4D9E6E8960DF77EE1571A637929C2D8C4A28|yhdV]-[gene|2F86A2FF36ED00DB0A9A91B064EBD095F5E759ED|fluC]
description
[Pubmed|22383849]
Biological materials
Mutant
MGNA-B487 (yhdW::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1486 NBRP B. subtilis, Japan]
BKE09620 ([gene|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE09620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTAAGTCAGCTCCTCG, downstream forward: _UP4_GATTTCATCATAAAGGATGG
BKK09620 ([gene|04CACAF4F786090AB67D7C606C944F07B7A7FE55|yhdW]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK09620 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAGCTAAGTCAGCTCCTCG, downstream forward: _UP4_GATTTCATCATAAAGGATGG
References
Research papers
Page visits: 2024
Time of last update: 2025-01-05 03:46:19
Author of last update: Melvin.boenninger