ydbD
168
general stress protein, similar to manganese-containing catalase
locus
BSU_04430
Molecular weight
30.11 kDa
pI
4.86
function
survival of ethanol stress
product
unknown
essential
no
synonyms
ydbD
Outlinks
Genomic Context
Categories containing this gene/protein
List of homologs in different organisms, belongs to COG3546 (Galperin et al., 2021)
This gene is a member of the following regulons
Gene
Coordinates
495,740 496,561
The protein
Catalyzed reaction/ biological activity
2 H2O2 --> O2 + 2 H2O (according to UniProt)
Protein family
[wiki|catalase family] (according to UniProt)
Structure
[PDB|1JKU] (from Lactobacillus plantarum, 51% identity) [pubmed|11587647]
[AF|P80878]
Paralogous protein(s)
[protein|59EC45E8731FE989152553A69ACEF6569E88F85C|yjqC], [protein|8F21A4C6228A772B38597991AF43E6B0708339BF|cotJC]
Expression and Regulation
Operons
genes
[gene|7428E80AC67A659B8602AF887EA7DFFD4976B40C|dctB]-[gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]
description
[Pubmed|10708364]
regulation
induced by stress ([protein|search|SigB]) [Pubmed|15805528]
sigma factors
[protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB]: sigma factor, [Pubmed|15805528], in [regulon|protein:580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB regulon]
genes
[gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]
regulation
induced by stress ([protein|search|SigB]) [Pubmed|15805528]
Biological materials
Mutant
BKE04430 ([gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]::erm trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04430 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTACCCATCTCCTTTTT, downstream forward: _UP4_TAAAGAGACAAGCCCAAAAC
BKK04430 ([gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]::kan trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04430 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTACCCATCTCCTTTTT, downstream forward: _UP4_TAAAGAGACAAGCCCAAAAC
References
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Time of last update: 2024-12-02 18:15:34
Author of last update: Melvin.boenninger