ydbD

ydbD
168

general stress protein, similar to manganese-containing catalase

locus
BSU_04430
Molecular weight
30.11 kDa
pI
4.86
Protein length
273 aaSequenceBlast
Gene length
822 bpSequenceBlast
function
survival of ethanol stress
product
unknown
essential
no
synonyms
ydbD
Outlinks
BsubCyc SubtiList UniProt STRING Genoscapist PaperBLAST

Genomic Context

Categories containing this gene/protein

List of homologs in different organisms, belongs to COG3546 (Galperin et al., 2021)

This gene is a member of the following regulons

Gene
Coordinates
495,740  496,561
The protein
Catalyzed reaction/ biological activity
2 H2O2 --> O2 + 2 H2O (according to UniProt)
Protein family
[wiki|catalase family] (according to UniProt)
Structure
[PDB|1JKU] (from Lactobacillus plantarum, 51% identity) [pubmed|11587647]
[AF|P80878]
Paralogous protein(s)
[protein|59EC45E8731FE989152553A69ACEF6569E88F85C|yjqC], [protein|8F21A4C6228A772B38597991AF43E6B0708339BF|cotJC]
Expression and Regulation
Operons
genes
[gene|7428E80AC67A659B8602AF887EA7DFFD4976B40C|dctB]-[gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]
description
[Pubmed|10708364]
regulation
induced by stress ([protein|search|SigB]) [Pubmed|15805528]
sigma factors
[protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB]: sigma factor, [Pubmed|15805528], in [regulon|protein:580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB regulon]
Open in new tab

[gene|7428E80AC67A659B8602AF887EA7DFFD4976B40C|dctB]→[gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]

2024-12-21 15:50:28

ghost

73

0c4ad99df7b136d668ce6c0563d387d07a26668b

25539691E40591F4440AB70FBF0BE100FF4DF73C

genes
[gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]
regulation
induced by stress ([protein|search|SigB]) [Pubmed|15805528]
Open in new tab

[gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]

2024-12-21 16:21:21

ghost

55

96dd3b9ce6a4d1113ad8a66a783ced2e318561b2

D6F9CF11D8A270A0620694275A4C7A5EA6D1276D

Biological materials
Mutant
BKE04430 ([gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE04430 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTACCCATCTCCTTTTT,  downstream forward: _UP4_TAAAGAGACAAGCCCAAAAC
BKK04430 ([gene|01CE4BBBEB0C0855201D396FB8036F72B64EA7DD|ydbD]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK04430 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATGTACCCATCTCCTTTTT,  downstream forward: _UP4_TAAAGAGACAAGCCCAAAAC
References
15805528,10708364,11587647

01CE4BBBEB0C0855201D396FB8036F72B64EA7DD

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Time of last update: 2024-12-30 22:41:33

Author of last update: Melvin.boenninger