Category: RNA synthesis and degradation
[category|SW.3|3. Information processing]
[category|SW.3.2|3.2. RNA synthesis and degradation]
[category|SW.3.2.1|3.2.1. Transcription]
[category|SW.3.2.1.1|3.2.1.1. RNA polymerase]
| Name | Function |
| [gene|5996A5C25E108A3C4562686BF34A59CB14FD56EB|rpoA] | transcription |
| [gene|EC32328548BFB59D9026ACE351C946DBBC0932BC|rpoB] | [wiki|transcription] |
| [gene|BC8B37355E6FADBA5F4636C3879E99003B0F3E84|rpoC] | [wiki|transcription] |
| [gene|632C661255DD9C2865CB2F9D68A805997A833BCB|rpoE] | [wiki|transcription] |
| [gene|5F41273FB867C688011738CD45AA6FF5D3987EFE|rpoY] | control of [wiki|RNA polymerase] activity |
| [gene|921933B6B893083F151AABDEDCBC65F2E55677BE|yloH] | unknown |
[category|SW.3.2.1.2|3.2.1.2. Sigma factors]
| Name | Function |
| [gene|AE8D4F07EFB17DA727D80229C3E72075928AA352|rsoA] | [wiki|RNA polymerase] [wiki|sigma factor] |
| [gene|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA] | transcription |
| [gene|580011DE5DC40EC9E7E0512791D328FAA010DCB8|sigB] | general stress response, biocontrol of fungal growth |
| [gene|7024E4162A6D827069F882FDEACA696EBC05DD40|sigD] | regulation of flagella, motility, chemotaxis and autolysis |
| [gene|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|sigE] | transcription of [wiki|sporulation ]genes (early mother cell) |
| [gene|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|sigF] | transcription of [wiki|sporulation] genes (early forespore) |
| [gene|5F24258282F3166B7696B9E9ABC1706E4D06C944|sigG] | transcription of [wiki|sporulation] genes (late forespore) |
| [gene|DC3449D5F195E5C2E9E14FEC95396C8F1FDF73B4|sigH] | transcription of early stationary phase genes ([wiki|sporulation], competence) |
| [gene|3DEAC421B4B173C6BBC700E57790751B7AFDF319|sigI] | control of a class of heat shock genes |
| [gene|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|sigK] | late mother cell-specific gene expression |
| [gene|6FAD8804AA32B84819DDE57C0AF63F208FB9FFD1|sigKC] | late mother cell-specific gene expression |
| [gene|1118A21CC581B0470EC6E7C178F2523CDCA70F93|sigL] | utilization of arginin, acetoin and fructose, required for cold adaptation |
| [gene|081DF3EE9FA56209D648C7677188C61CE3AA8E41|sigM] | adaptation to inhibitors of peptidoglycan synthesis |
| [gene|6359025A73C0BD313F5BCC6F56FE88B820902AAA|sigO] | [wiki|RNA polymerase] [wiki|sigma factor] |
| [gene|D04629D798E458AD538809BB2B150B7FA81D2C7E|sigV] | resistance to lytic enzymes |
| [gene|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|sigW] | adaptation to membrane-active compounds |
| [gene|E77364F274A520FCCA9F5C9504E317B047BA29E6|sigX] | resistance to cationic antimcrobial peptides |
| [gene|801E92306971E26AD4AB155172B7F4EFDE2F9170|sigY] | maintenance of the SP prophage |
| [gene|826F81933BE84AEF0C71EE9B90390B14B4CB0E9F|sigZ] | [category|SW.3.2.1|Transcription] |
| [gene|458406A4E6824C24493CFC19718F10720AA3B453|xpf] | transcription of PBSX prophage genes |
| [gene|544344B61A804F367BB726976E0C87B61998490A|ylaC] | [category|SW.3.2.1|Transcription] |
[category|SW.3.2.1.3|3.2.1.3. Transcription elongation/ termination]
| Name | Function |
| [gene|0F89D0B03F54B283CDD99A940D43C18E6B5703BB|cspD] | RNA chaperone |
| [gene|6FBF27C12B4B3DC2CE373E5199357042114471F8|greA] | transcription elongation |
| [gene|4DE90422754DA1FD9EFE58766EACB99CE6171207|helD] | [wiki|transcription] |
| [gene|AD1F39823ABCE2A222259B879513752942C59590|mfd] | promotes strand-specific DNA repair by displacing |
| [gene|8887ADC77C43F21CD375BDAA4D38E940786DAD4F|nusA] | transcription |
| [gene|6155468AFF216D97373CEF7B8C6E6C7BB9D4617F|nusB] | stable RNA transcription |
| [gene|43CFA3477B4EEB4CE0B2DF63ED2B5EDB171E79C7|nusG] | transcription |
| [gene|7CD46C64BE69EDADF58B634DC50C3F61BFFEC5B5|rho] | transcriptional termination |
[category|SW.3.2.1.4|3.2.1.4. Prophage/ phage transcription]
| Name | Function |
| [gene|34380A2F469ACFD90D450717A41D6F5CC19DCD7E|yonO] | transcription of late SP beta genes |
[category|SW.3.2.2|3.2.2. RNA chaperones]
| Name | Function |
| [gene|16E048FE5AF76CC771DEBBA8CB56B75A5414B3A2|cspB] | RNA chaperone |
| [gene|D453E1E7D4256B56AFB2149731E08B104D59431B|cspC] | RNA chaperone |
| [gene|0F89D0B03F54B283CDD99A940D43C18E6B5703BB|cspD] | RNA chaperone |
| [gene|147AFEBEA546FDBEEB08E9A8D9C7BCDC9B83CC90|fbpB] | RNA chaperone |
| [gene|40D3FE1A512703B090316C31099956DB6A7F515B|hfq] | unknown |
| [gene|E9FF83FA90DCD7ECABFD67E95ECFAD3518DDC775|spoVG] | cell division, control of sporulation initiation |
[category|SW.3.2.3|3.2.3. DEAD-box RNA helicases]
| Name | Function |
| [gene|E169F9711635457EA65FA71CCE9D7FF29DD8DF02|cshA] | RNA helicase |
| [gene|C83BD80DE0FD187D07B914F64696438ED5130107|cshB] | RNA helicase |
| [gene|EACD0C84AA3CE41EF05EAA3D25AA1153293EB562|deaD] | RNA helicase |
| [gene|0362D937D985846AEE4D0DEA57B62F915E8D35E5|yfmL] | RNA helicase |
[category|SW.3.2.4|3.2.4. RNases]
[category|SW.3.2.4.1|3.2.4.1. Exoribonucleases]
| Name | Function |
| [gene|4E384490E7D2761BC8779483C4950D6D14323D1C|kapD] | regulation of sporulation initiation |
| [gene|4C630B61249F8F2369E9BFE8A49885D3225DE7B6|nrnA] | processing of short RNA substrates |
| [gene|BBB0848B2516188E950763E1D0194860923CE895|nrnB] | degradation of RNA oligonucleotides |
| [gene|64C6D783FF3F41C81B216F798A1DC8071345B1ED|pnpA] | DNA repair, competence development, RNA degradation |
| [gene|3EB289D0F58A58C693AB588798EE66A731341999|rnjA] | RNA processing |
| [gene|0472A4346ADA1DC41C9D00E8F3222A0EBB76DFA8|rnr] | nonspecific degradation of rRNA |
| [gene|A18474CD50C2A1A83CF04C74098659BF1649B4DC|rph] | 3-5 exoribonuclease |
| [gene|6D585EB5E56A1E5C1C31680D960043BA08C817E2|yhaM] | RNA degradation |
[category|SW.3.2.4.2|3.2.4.2. Endoribonucleases]
| Name | Function |
| [gene|031FDF8443A8A4D5B042B7591EBE2E6C74F07702|mrnC] | maturation of 23S rRNA |
| [gene|2E5A557E417CB355331CC0555D46A79793EB90B3|ndoA] | unknown |
| [gene|BAB297D18F94FFA67B8D12A684AB4D1BCDFB4981|rnc] | processing and degradation of RNA molecules |
| [gene|D5275ECDC2A70FBAC2CA5980F04B272C3328FC90|rnhB] | endonucleolytic cleavage of RNA in RNA-DNA hybrid molecules |
| [gene|B8B0F6B129475FDEEA8D538A51C153BF9A35887D|rnhC] | endonucleolytic cleavage of RNA in RNA-DNA hybrid molecules, processing of R-loops, maturation of Okazaki fragments |
| [gene|B73CE26E7AEFACFA82C67F3E7DBBB3F766F739CA|rnjB] | RNA processing and degradation |
| [gene|5BA7AA691CFE4635DEFBD0B8B820F487B58A5DB7|rnmV] | 5S ribosomal RNA maturation |
| [gene|594F2D36BE71A45303A33AA2A2931F56F0A969ED|rnpA] | cleavage of precursor sequences from the 5 ends of pre-tRNAs |
| [gene|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|rny] | RNA processing and degradation |
| [gene|C40C5D35ED53D343C8200248FCCB010BAB388054|rnz] | processing of CCA-less tRNA precursors |
| [gene|172652156ABFE72D5BAAC22729CE17CA947538B5|yacP] | ribosome-dependent mRNA decay |
| [gene|A57D2C1536F3E93CD687C28C59FF297355CAB303|yloC] | unknown |
| [gene|E0437C86E5F3707FF1DA13C8B98F73130DED8FB4|yqfG] | 16S rRNA maturation |
| [gene|4D46B2842D6B8B8002F47544E76DB36C24364E69|yurI] | extracellular RNA degradation |
[category|SW.3.2.4.3|3.2.4.3. RNA pyrophosphohydrolase]
| Name | Function |
| [gene|0C40455EB53D25363FC3EB0E84502A76520F5F91|nahA] | initiation of RNA degradation |
| [gene|50A50E33796EEF8046142EE928753C355EF42A1A|rppH] | DNA repair, RNA degradation |
[category|SW.3.2.4.4|3.2.4.4. RNases/ Other]
| Name | Function |
| [gene|34B0FA6E7E25D1E5D8A54B70F5562BD0BD05B498|rimM] | maturation of 16S rRNA |
| [gene|57A79AAF00243B5E058FA901D43AA7B55CA33F63|rnpB] | cleavage of precursor sequences from the 5 ends of pre-tRNAs |
[category|SW.3.2.4.5|3.2.4.5. Effectors of RNA degradation]
| Name | Function |
| [gene|19080097FD3F48C730C355DE84C1922206A07AFF|SR7P] | control of [gene|789D08564463542B8D96FC12F408549A669703CE|rpsD] expression, control of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] activity |
| [gene|67651D5D3122A89F57F9E7D49074C82A8990A277|eno] | enzyme in glycolysis/ gluconeogenesis |
| [gene|EE52DFA35B935E551871D079A9BE877DB2001A3B|ricA] | control of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] activity, see [wiki|Targets of the Y complex] |
| [gene|6C9A092F38739A3759793EF8B496569CD02C2E3F|ricF] | control of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] activity, see [wiki|Targets of the Y complex] |
| [gene|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|ricT] | control of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] activity, see [wiki|Targets of the Y complex] |
| [gene|F4097349A563503468A2A14F062AEAC532C7917A|rnpM] | control of tRNA maturation |
[category|SW.3.2.5|3.2.5. RNase/ based on similarity]
| Name | Function |
| [gene|A4DB115D36907DE3EE6F80738E4D777838A3FE7F|ydcI] | unknown |
| [gene|09343BE8357AB24C79B69816FAE65D161E668F01|ypdQ] | unknown |
| [gene|1852AA40C48859202392834A3E791F6877DD3D30|ypeP] | unknown |
| [gene|508FC7117B4CE7AF119B3830AE9DC113CB058039|yrrK] | 16S rRNA maturation |
Page visits: 2023
Time of last update: 2024-12-16 14:29:48
Author of last update: ghost