Category: DNA repair/ recombination

Category: DNA repair/ recombination

<< ALL CATEGORIES

[category|SW.3|3. Information processing]

[category|SW.3.1|3.1. Genetics]

[category|SW.3.1.5|3.1.5. DNA repair/ recombination]

NameFunction
[gene|0F8A564256A598DB3A36668FA0C984542FE1323F|adaA]adaptive response to alkylative DNA damage
[gene|D7E4E4A95CFDB3CFCC7432B08653644AF6876CA1|adaB]adaptive response to alkylative DNA damage
[gene|49E8BFEC1CAB77DD91E0ED0791EBD480E4871239|addA]DNA repair/ recombination
[gene|55A1EF8A10CB398CCD3FDD06D9483FE0DCE31C64|addB]DNA repair/ recombination
[gene|297DF91EF3E91A6D2DC39BBC7FE8711AB7EBE509|alkA]adaptive response to alkylative DNA damage
[gene|DEB7605B4F6F5F365A49C1C15647F9767B01BF66|bstG]response to DNA damage
[gene|03BFD8AD2E3D95858752F46366F6C2028D709029|dinG]response to DNA damage
[gene|FC53216F600994C862F0C0D017C3FA28EB75DCB6|dprA][category|SW.3.1.5|DNA repair/ recombination]
[gene|38CC84343C47CBF37F007E9056A9248869C396E1|exoA]repair of oxidative DNA damage in spores
[gene|C595D32D98723E93AF26B5C864FD61AF4739E069|fin]control of [wiki|sporulation]
[gene|74E2AB77354355549D14152D3566C9B953A4CB31|hlpB]rescuing of [protein|49E8BFEC1CAB77DD91E0ED0791EBD480E4871239|addA]-[protein|55A1EF8A10CB398CCD3FDD06D9483FE0DCE31C64|addB]-mediated recombination intermediates
[gene|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|lexA]regulation of DNA damage repair
[gene|127CB0930A2D96B18D9261180028818F158C68CB|ligD]non-homologous end joining DNA repair, repair of gapped DNA substrates
[gene|AC2618C53DA020F2CD5192AEE462D15E8EE0F57F|lrpC]DNA repair/ recombination
[gene|AD1F39823ABCE2A222259B879513752942C59590|mfd]promotes strand-specific DNA repair by displacing
[gene|A86A013EDCE59D7EF84FB836A751E66C58CADF45|mutL]DNA repair
[gene|EC96EDED2472607DFA4C5EBA054157F7832EE41C|mutM]DNA repair
[gene|E2A8B04CD729332F9E6A13195181983F751F2F25|mutS]DNA repair
[gene|6085BDAD40F719555EA4EEA7BBAD74103BD03D0F|mutT]DNA repair, protection against oxidative stress
[gene|B62083CF18FC4C796D95B960CF62FA963FC26CDE|mutY]DNA repair
[gene|3C8BA04BA2BD0FEA28E99DA39BEB710CE3F5922D|nfo]repair of oxidative DNA damage in spores
[gene|C352560155F5B2E951B5059794D7B319C1A3AF2C|nth]DNA repair
[gene|9492D341F54BE019B21C0BAF7465AD8F84CC6F23|ogt]DNA repair
[gene|C73E52D214E24F21696973B19B0A44CE785D6FBA|pcrA]coupling of DNA replication, transcription, recombination and segregation
[gene|64C6D783FF3F41C81B216F798A1DC8071345B1ED|pnpA]DNA repair, competence development, RNA degradation
[gene|3D6DA8B52A4CB49361E67906140696FFA1EF6099|polA]DNA replication
[gene|D3954F2BCF6CE66505E4F48FCB4A61EE8D24F6D3|polX]DNA repair
[gene|C87D33852F263A553CA747608E6200E4AD8344B5|polY1]generation of mutations in stationary phase
[gene|F0BC150F59730E64BA9AB3F979544EF6B5CC4E9E|polY2]UV-targeted mutagenesis
[gene|151F226370D225776F3FE7EA4901485095F1AC45|radA]homologous recombination, control of c-di-AMP formation, co-ordination of responses to replicative stress and genetic recombination
[gene|2BD11D71AA6D9EFAD8A209C8813CC8B059180C84|radC]DNA repair
[gene|A44D4677FB70BE8F554BF1001A500F817C7DA95F|recA]DNA repair/ recombination
[gene|EBE03AEC7EC594A3115A7A72194BDFF300AA0BFA|recF][category|SW.3.1.5|DNA repair/ recombination]
[gene|24B1C2A663A5B7C45940272595868F9F05A04A7B|recG]DNA repair and chromosomal segregation
[gene|5680A06A74D3EC6310EF8677795511C75DB3059E|recN]DNA repair and genetic recombination
[gene|80E6F156764FF30300D034EE6FB44F2DB8338AF3|recO]DNA repair/ recombination
[gene|BEBAF1EB53EBB3E7558BB5FE73C418B50000FA29|recR][category|SW.3.1.5|DNA repair/ recombination]
[gene|4A4FCD876C3CA1D821792803CA2A0CB2E97D3F5E|recS]replication reactivation pathway
[gene|ED1E2011C7E43A8B7E9FD9A471BC11B9DEA73177|recU][wiki|DNA repair/ recombination] and [wiki|chromosome segregation]
[gene|50A50E33796EEF8046142EE928753C355EF42A1A|rppH]DNA repair, RNA degradation
[gene|7EBC90946E7167A3B0212193873855CAE0EFF7D4|ruvA][wiki|DNA repair/ recombination]
[gene|8DFD57B73FE5D49BB547E050182A96CE6E8BFF77|ruvB][wiki|DNA repair/ recombination]
[gene|ED825D5B3290BA8F9C92477B1FCC433ADB3C8449|sbcC]DNA inter-strand cross-link repair
[gene|4D89BFFB1073407A7A1762AFD18B49F3414D6787|sbcD]unknown
[gene|709C4D0AE9C78C9A367F37B9C3B37D2516850D7C|sbcE]DNA double-strand break repair and competence
[gene|8B3B4B181D949BD9B05AD6FCA5B6C773DBD84018|splA]regulation of the splA-splB operon
[gene|B873AE29ACAA0714D5F2E8648449B3280353C8AA|splB]protection of spore DNA against photodamage
[gene|8DE39680CA7663803A107066FBE9AFFCC77DB72A|ssbA][category|SW.3.1.1|DNA replication], [category|SW.3.1.5|DNA repair/ recombination]
[gene|1CDF658441061EA476E27C2E60DEE45C4F45AC15|ssbB]required for efficient genetic transformation
[gene|DC73C11C3C54D35B2D9A0A28666A29E36451E7F8|ung]DNA repair
[gene|39B73AADBFD42203ADFA2E834697799E6430A086|uvrA]DNA repair after UV damage
[gene|DEFBDC2AB8E43FB06C65389160E8EACFE5FB9705|uvrB]DNA repair after UV damage
[gene|6624AA675E9E52FFABFF26055F63471AEF881CC5|uvrC]DNA repair after UV damage
[gene|BE8D5E038C0FD748C0F9C3F18DCA601BFFE8EA52|uvrX]DNA repair after UV damage
[gene|B3E1652E9F3BDC9520847C479A2C0BED25025B4C|ykoV]non-homologous end joining DNA repair, repair of gapped DNA substrates
[gene|611B441B84C2179B7A19745461CA1725DF2F82CD|ywjD]protection of developing and dormant spores against UV DNA damage
[gene|F2C6956D69FBE57933E46136436E8E80B63DF8BB|ywqL]DNA excision repair

[category|SW.3.1.5.1|3.1.5.1. Excision of prophages]

NameFunction
[gene|318618D2FB485EA2A08AD8468B1144ACC1CA2B99|spoIVCA]excision of the [category|SW.5.1.3|Skin element], creation of the [gene|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|sigK] gene
[gene|6CBEACD5C9C88319C4F9BE4C53F5C6534EF9135F|sprA]excision of the [wiki|SP-beta prophage]
[gene|46826326719EB32B5733953EC090FD91CB59C5B6|sprB]excision of [wiki|SP-beta prophage]

[category|SW.3.1.5.2|3.1.5.2. A/P endonucleases]

NameFunction
[gene|38CC84343C47CBF37F007E9056A9248869C396E1|exoA]repair of oxidative DNA damage in spores
[gene|3C8BA04BA2BD0FEA28E99DA39BEB710CE3F5922D|nfo]repair of oxidative DNA damage in spores
[gene|C352560155F5B2E951B5059794D7B319C1A3AF2C|nth]DNA repair

[category|SW.3.1.5.3|3.1.5.3. Spore-encoded non-homologous end joining system]

NameFunction
[gene|127CB0930A2D96B18D9261180028818F158C68CB|ligD]non-homologous end joining DNA repair, repair of gapped DNA substrates
[gene|B3E1652E9F3BDC9520847C479A2C0BED25025B4C|ykoV]non-homologous end joining DNA repair, repair of gapped DNA substrates

[category|SW.3.1.5.4|3.1.5.4. Double strand breaks repair]

NameFunction
[gene|ED1E2011C7E43A8B7E9FD9A471BC11B9DEA73177|recU][wiki|DNA repair/ recombination] and [wiki|chromosome segregation]
[gene|7EBC90946E7167A3B0212193873855CAE0EFF7D4|ruvA][wiki|DNA repair/ recombination]
[gene|8DFD57B73FE5D49BB547E050182A96CE6E8BFF77|ruvB][wiki|DNA repair/ recombination]

[category|SW.3.1.5.5|3.1.5.5. Oxidized guanine (GO) DNA repair system]

NameFunction
[gene|EC96EDED2472607DFA4C5EBA054157F7832EE41C|mutM]DNA repair
[gene|B62083CF18FC4C796D95B960CF62FA963FC26CDE|mutY]DNA repair
[gene|50A50E33796EEF8046142EE928753C355EF42A1A|rppH]DNA repair, RNA degradation

[category|SW.3.1.5.6|3.1.5.6. Other proteins]

NameFunction
[gene|0F8A564256A598DB3A36668FA0C984542FE1323F|adaA]adaptive response to alkylative DNA damage
[gene|D7E4E4A95CFDB3CFCC7432B08653644AF6876CA1|adaB]adaptive response to alkylative DNA damage
[gene|49E8BFEC1CAB77DD91E0ED0791EBD480E4871239|addA]DNA repair/ recombination
[gene|55A1EF8A10CB398CCD3FDD06D9483FE0DCE31C64|addB]DNA repair/ recombination
[gene|297DF91EF3E91A6D2DC39BBC7FE8711AB7EBE509|alkA]adaptive response to alkylative DNA damage
[gene|DEB7605B4F6F5F365A49C1C15647F9767B01BF66|bstG]response to DNA damage
[gene|03BFD8AD2E3D95858752F46366F6C2028D709029|dinG]response to DNA damage
[gene|FC53216F600994C862F0C0D017C3FA28EB75DCB6|dprA][category|SW.3.1.5|DNA repair/ recombination]
[gene|FCDE5EA6E50A8C72A499E2F1FFB808DC86466A29|fenA]removal of RNA from Okazaki fragments
[gene|C595D32D98723E93AF26B5C864FD61AF4739E069|fin]control of [wiki|sporulation]
[gene|6FBF27C12B4B3DC2CE373E5199357042114471F8|greA]transcription elongation
[gene|74E2AB77354355549D14152D3566C9B953A4CB31|hlpB]rescuing of [protein|49E8BFEC1CAB77DD91E0ED0791EBD480E4871239|addA]-[protein|55A1EF8A10CB398CCD3FDD06D9483FE0DCE31C64|addB]-mediated recombination intermediates
[gene|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|lexA]regulation of DNA damage repair
[gene|AC2618C53DA020F2CD5192AEE462D15E8EE0F57F|lrpC]DNA repair/ recombination
[gene|AD1F39823ABCE2A222259B879513752942C59590|mfd]promotes strand-specific DNA repair by displacing
[gene|4D286C045A43FBF0F6E93E9E46AD7F25E35ADA7C|mrfA]repair of mitomycin C-induced DNA lesions
[gene|3F1D78CAAA4B5057DEBB24C4D382F96DA4AA4852|mrfB]mitomycin C-specific DNA damage repair
[gene|6085BDAD40F719555EA4EEA7BBAD74103BD03D0F|mutT]DNA repair, protection against oxidative stress
[gene|9492D341F54BE019B21C0BAF7465AD8F84CC6F23|ogt]DNA repair
[gene|C73E52D214E24F21696973B19B0A44CE785D6FBA|pcrA]coupling of DNA replication, transcription, recombination and segregation
[gene|64C6D783FF3F41C81B216F798A1DC8071345B1ED|pnpA]DNA repair, competence development, RNA degradation
[gene|3D6DA8B52A4CB49361E67906140696FFA1EF6099|polA]DNA replication
[gene|D3954F2BCF6CE66505E4F48FCB4A61EE8D24F6D3|polX]DNA repair
[gene|C87D33852F263A553CA747608E6200E4AD8344B5|polY1]generation of mutations in stationary phase
[gene|F0BC150F59730E64BA9AB3F979544EF6B5CC4E9E|polY2]UV-targeted mutagenesis
[gene|151F226370D225776F3FE7EA4901485095F1AC45|radA]homologous recombination, control of c-di-AMP formation, co-ordination of responses to replicative stress and genetic recombination
[gene|2BD11D71AA6D9EFAD8A209C8813CC8B059180C84|radC]DNA repair
[gene|48BCA38E609E443406E03A32D2BB8DA2E9915A71|rarA]control of the access of the replication machinery to a collapsed replication fork
[gene|A44D4677FB70BE8F554BF1001A500F817C7DA95F|recA]DNA repair/ recombination
[gene|A3D05FE662CCCFE79B3CB38486206413B84E5D80|recD2]replication fork progression, control of [protein|A44D4677FB70BE8F554BF1001A500F817C7DA95F|recA] activity
[gene|EBE03AEC7EC594A3115A7A72194BDFF300AA0BFA|recF][category|SW.3.1.5|DNA repair/ recombination]
[gene|24B1C2A663A5B7C45940272595868F9F05A04A7B|recG]DNA repair and chromosomal segregation
[gene|BA755FA1CB1E0C006E9A23489A7C8997141AA498|recJ]replication fork maintenance
[gene|5680A06A74D3EC6310EF8677795511C75DB3059E|recN]DNA repair and genetic recombination
[gene|80E6F156764FF30300D034EE6FB44F2DB8338AF3|recO]DNA repair/ recombination
[gene|E6EA8098E37A4A2F7370920AC1A500EE4319AAA2|recQ]replication fork maintenance
[gene|BEBAF1EB53EBB3E7558BB5FE73C418B50000FA29|recR][category|SW.3.1.5|DNA repair/ recombination]
[gene|4A4FCD876C3CA1D821792803CA2A0CB2E97D3F5E|recS]replication reactivation pathway
[gene|144E7D10740C5F146403612B8A0C88E02FB9C572|recX][wiki|DNA repair/ recombination]
[gene|ED825D5B3290BA8F9C92477B1FCC433ADB3C8449|sbcC]DNA inter-strand cross-link repair
[gene|4D89BFFB1073407A7A1762AFD18B49F3414D6787|sbcD]unknown
[gene|709C4D0AE9C78C9A367F37B9C3B37D2516850D7C|sbcE]DNA double-strand break repair and competence
[gene|8B3B4B181D949BD9B05AD6FCA5B6C773DBD84018|splA]regulation of the splA-splB operon
[gene|B873AE29ACAA0714D5F2E8648449B3280353C8AA|splB]protection of spore DNA against photodamage
[gene|8DE39680CA7663803A107066FBE9AFFCC77DB72A|ssbA][category|SW.3.1.1|DNA replication], [category|SW.3.1.5|DNA repair/ recombination]
[gene|1CDF658441061EA476E27C2E60DEE45C4F45AC15|ssbB]required for efficient genetic transformation
[gene|DC73C11C3C54D35B2D9A0A28666A29E36451E7F8|ung]DNA repair
[gene|39B73AADBFD42203ADFA2E834697799E6430A086|uvrA]DNA repair after UV damage
[gene|DEFBDC2AB8E43FB06C65389160E8EACFE5FB9705|uvrB]DNA repair after UV damage
[gene|6624AA675E9E52FFABFF26055F63471AEF881CC5|uvrC]DNA repair after UV damage
[gene|BE8D5E038C0FD748C0F9C3F18DCA601BFFE8EA52|uvrX]DNA repair after UV damage
[gene|A9D5625FF5F1A3845FF6F8A290F647CCA73D39EF|yolD]unknown
[gene|CFCCFD8C6420CC1DD076B091AD3D914FC8AB22D5|yqaJ]unknown
[gene|903E11BD2CFF3EE1A831F0F50F91741893C3DAB8|yqaK]unknown
[gene|9BC3DF46C944A0FD5CAAB4513C4AF00EFC5FC8D5|yqjX]unknown
[gene|611B441B84C2179B7A19745461CA1725DF2F82CD|ywjD]protection of developing and dormant spores against UV DNA damage

[category|SW.3.1.5.7|3.1.5.7. Mismatch repair (MMR)]

NameFunction
[gene|83E05071DEC874248D3E96B8F3A093C65939B314|dnaN][category|SW.3.1.1|DNA replication], DNA repair
[gene|A86A013EDCE59D7EF84FB836A751E66C58CADF45|mutL]DNA repair
[gene|E2A8B04CD729332F9E6A13195181983F751F2F25|mutS]DNA repair
[gene|D5321F707E183E72B225F1CED2F2FDCB1183B88A|walJ]coordination of cell division with DNA replication
key reviews
12045091,21517913,22749141,22933559,23046409,23202527,23380520,16132081,10961463,25731766,26354434,30746801,36030574,35210609,38551349
key original publications
24670664,37250769

id: SW.3.1.5

title: Category: DNA repair/ recombination

count:

count:

Author of last update: Jstuelk, Time of last update2024-04-24 09:48:01

SW.3.1.5

Page visits:

Time of last update: 2024-04-24 09:48:01

Author of last update: Jstuelk