Jump to content

Sandbox: Difference between revisions

From SubtiWiki
← Older editNewer edit →
Sroppel (talk | contribs)
72,719 edits
No edit summary
Sroppel (talk | contribs)
72,719 edits
No edit summary
Line 4: Line 4:
|-
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''ypuA''
|''ypuD''
|-
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
Line 14: Line 14:
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|-
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 31 kDa, 4.515  
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 7.027  
|-
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 870 bp, 290 aa  
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 342 bp, 114 aa  
|-
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ppiB]]'', ''[[lysA]]''
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ypuE]]'', ''[[sipS]]''
|-
|-
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14269&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14262&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''
|-
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ypuA_context.gif]]
|colspan="2" | '''Genetic context''' <br/> [[Image:ypuD_context.gif]]
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
  <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|-
Line 35: Line 35:
=== Basic information ===
=== Basic information ===


* '''Locus tag:''' BSU23370
* '''Locus tag:''' BSU23300


===Phenotypes of a mutant ===
===Phenotypes of a mutant ===
Line 41: Line 41:
=== Database entries ===
=== Database entries ===


* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ypuA.html]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ypuD.html]


* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10511]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10516]


=== Additional information===
=== Additional information===
Line 72: Line 72:
* '''Interactions:'''
* '''Interactions:'''


* '''Localization:''' cytoplasm (according to Swiss-Prot)
* '''Localization:'''


=== Database entries ===
=== Database entries ===
Line 78: Line 78:
* '''Structure:'''
* '''Structure:'''


* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P31847 P31847]
* '''Swiss prot entry:''' [http://www.uniprot.org/uniprot/P17616 P17616]


* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU23370]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu+BSU23300]


* '''E.C. number:'''
* '''E.C. number:'''
Line 90: Line 90:
* '''Operon:'''  
* '''Operon:'''  


* '''[[[[[[Sigma factor]]]]]]:''' [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17434969 PubMed]
* '''[[Sigma factor]]:''' [[SigB]] [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed],  [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/18179421 Pubmed]


* '''Regulation:'''  
* '''Regulation:''' induced by stress ([[SigB]]) [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]


* '''Regulatory mechanism:'''  
* '''Regulatory mechanism:'''  
Line 118: Line 118:
=References=
=References=


<pubmed>17434969, </pubmed>
<pubmed>11544224, </pubmed>
# Jervis et al. 2007. SigM-responsive genes of ''Bacillus subtilis'' and their promoters. J. Bacteriol. 189: 4534-4538. [http://www.ncbi.nlm.nih.gov/sites/entrez/17434969 PubMed]
# Petersohn et al. (2001) Global Analysis of the General Stress Response of ''Bacillus subtilis''. ''J Bacteriol.'' '''183:''' 5617-5631 [http://www.ncbi.nlm.nih.gov/pubmed/11544224 PubMed]
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]

Revision as of 13:49, 8 June 2009

  • Description: unknown

Gene name ypuD
Synonyms
Essential no
Product unknown
Function unknown
MW, pI 12 kDa, 7.027
Gene length, protein length 342 bp, 114 aa
Immediate neighbours ypuE, sipS
Get the DNA and protein sequences
(Barbe et al., 2009)
Genetic context
This image was kindly provided by SubtiList



The gene

Basic information

  • Locus tag: BSU23300

Phenotypes of a mutant

Database entries

  • DBTBS entry: [1]
  • SubtiList entry: [2]

Additional information

The protein

Basic information/ Evolution

  • Catalyzed reaction/ biological activity:
  • Protein family:
  • Paralogous protein(s):

Extended information on the protein

  • Kinetic information:
  • Domains:
  • Modification:
  • Cofactor(s):
  • Effectors of protein activity:
  • Interactions:
  • Localization:

Database entries

  • Structure:
  • KEGG entry: [3]
  • E.C. number:

Additional information

Expression and regulation

  • Operon:
  • Regulatory mechanism:
  • Additional information:

Biological materials

  • Mutant:
  • Expression vector:
  • lacZ fusion:
  • GFP fusion:
  • two-hybrid system:
  • Antibody:

Labs working on this gene/protein

Your additional remarks

References

<pubmed>11544224, </pubmed>

  1. Petersohn et al. (2001) Global Analysis of the General Stress Response of Bacillus subtilis. J Bacteriol. 183: 5617-5631 PubMed
  2. Author1, Author2 & Author3 (year) Title Journal volume: page-page. PubMed
Retrieved from "https://subtiwiki.uni-goettingen.de/wiki/index.php?title=Sandbox&oldid=89024"