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CpgA: Difference between revisions

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* '''Description:''' GTPase, activity stimulated by ribosomes, may be involved in ribosome maturation <br/><br/>
{{#bank: cpgA}}
 
{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''cpgA ''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yloQ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || GTPase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || ribosome assembly, coordination of peptidoglycan deposition in the cell wall
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15780 cpgA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=cpgA cpgA]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 33 kDa, 4.743 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 894 bp, 298 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[prkC]]'', ''[[rpe]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15780 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15780 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15780 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yloQ_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cpgA_1653103_1653999_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:cpgA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15780]]
|-
|}
 
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[cell wall/ other]]}},
{{SubtiWiki category|[[translation]]}},
{{SubtiWiki category|[[GTP-binding proteins]]}},
{{SubtiWiki category|[[phosphoproteins]]}}
 
= This gene is a member of the following [[regulons]] =
 
 
=The gene=
 
=== Basic information ===
 
* '''Locus tag:''' BSU15780
 
===Phenotypes of a mutant ===
* forms curly cells {{PubMed|22544754}}
 
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15780&redirect=T BSU15780]
 
* '''DBTBS entry:''' no entry
 
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13392]
 
=== Additional information===
 
 
=The protein=
 
=== Basic information/ Evolution ===
 
* '''Catalyzed reaction/ biological activity:'''
 
* '''Protein family:''' engC GTPase domain (according to Swiss-Prot)
 
* '''Paralogous protein(s):'''
 
=== Extended information on the protein ===
 
* '''Kinetic information:'''
 
* '''Domains:'''
 
* '''Modification:'''
** ''in vitro'' phosphorylated on Thr-166 by [[PrkC]], dephosphorylated by [[PrpC]] {{PubMed|22544754,19246764}}
 
* '''Cofactor(s):'''
 
* '''Effectors of protein activity:'''
 
* '''[[SubtInteract|Interactions]]:'''
** binds the 30S subunit of the ribosome {{PubMed|22544754}}
 
* '''[[Localization]]:'''
 
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15780&redirect=T BSU15780]
 
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1T9H 1T9H]
 
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34530 O34530]
 
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU15780]
 
* '''E.C. number:'''
 
=== Additional information===
 
=Expression and regulation=
 
* '''Operon:'''
** ''[[prpC]]-[[prkC]]-[[cpgA]]'' {{PubMed|16025310}}
** ''[[cpgA]]'' {{PubMed|16025310}}
 
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=cpgA_1653103_1653999_1 cpgA] {{PubMed|22383849}}
 
* '''Sigma factor:'''
 
* '''Regulation:'''
 
* '''Regulatory mechanism:'''
 
* '''Additional information:'''
** number of protein molecules per cell (minimal medium with glucose and ammonium): 170 {{PubMed|24696501}}
** number of protein molecules per cell (complex medium with amino acids, without glucose): 265 {{PubMed|24696501}}
 
=Biological materials =
 
* '''Mutant:'''
 
* '''Expression vector:'''
       
* '''lacZ fusion:'''
 
* '''GFP fusion:'''
 
* '''two-hybrid system:'''
 
* '''Antibody:'''
 
=Labs working on this gene/protein=
 
[[Tony Wilkinson]], York University, U.K. [http://www.york.ac.uk/depts/chem/staff/ajw.html homepage]
 
=Your additional remarks=
 
=References=
==Reviews==
<pubmed> 19575570 </pubmed>
==Original publications==
<pubmed> 15223319, 16485133, 14747714,22544754, 18344364, 19246764, 19246764, 15828870, 17005971, 18344364, 18984160 </pubmed>
 
[[Category:Protein-coding genes]]

Latest revision as of 11:49, 10 November 2015