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* '''Description:''' subunit of DNA topoisomerase IV <br/><br/>
{{#bank: ParC}}


{| align="right" border="1" cellpadding="2"
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''parC''
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|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''grlA ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
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|style="background:#ABCDEF;" align="center"| '''Product''' || subunit of DNA topoisomerase IV
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|style="background:#ABCDEF;" align="center"|'''Function''' || chromosome segregation and compaction
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18100 parC]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 91 kDa, 6.307 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2418 bp, 806 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[parE]]'', ''[[ynfC]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU18100 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU18100 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU18100 DNA_with_flanks]
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|-
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|colspan="2" | '''Genetic context''' <br/> [[Image:parC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=parC_1935448_1937868_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:parC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU18100]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA condensation/ segregation]]}},
{{SubtiWiki category|[[essential genes]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[LexA regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU18100
===Phenotypes of a mutant ===
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU18100&redirect=T BSU18100]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/parEC.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11803]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' topoisomerase gyrA/parC subunit family (according to Swiss-Prot)
* '''Paralogous protein(s):''' [[GyrA]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
** cytoplasm (Homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
** polar localization in actively growing cells [http://www.ncbi.nlm.nih.gov/sites/entrez/9539793 PubMed]
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU18100&redirect=T BSU18100]
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1WP5 1WP5] (C-terminal domain, Geobacillus stearothermophilus)
* '''UniProt:''' [http://www.uniprot.org/uniprot/Q45066 Q45066]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU18100]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[parE]]-[[parC]]'' {{PubMed|16267290}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=parC_1935448_1937868_1 parC] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
** induced by DNA damage ([[LexA]]) {{PubMed|16267290}}
* '''Regulatory mechanism:'''
** [[LexA]]: transcription repression {{PubMed|16267290}}
* '''Additional information:'''
** number of protein molecules per cell (minimal medium with glucose and ammonium): 67 {{PubMed|24696501}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>16272394,15466871,,16267290,16479537 9539793</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 13:24, 17 August 2015