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ComX: Difference between revisions

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* '''Description:''' competence pheromone precursor, transfers cell density signal to [[ComP]]; triggers the production of surfactin <br/><br/>
{{#bank: ComX}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''comX''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || competence pheromone precursor
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || [[quorum sensing]]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31700 comX]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=ComX ComX]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 6 kDa, 4.358 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 165 bp, 55 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[comP]]'', ''[[comQ]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU31700 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU31700 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU31700 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:comX_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comX_3255853_3256020_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:comX_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU31700]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[genetic competence]]}},
{{SubtiWiki category|[[quorum sensing]]}}
= This gene is a member of the following [[regulons]] =
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU31700
===Phenotypes of a mutant ===
* the mutation suppresses the mucoid phenotype of ''[[motA]]'' or ''[[motB]]'' mutants due to loss of [[DegU]] phosphorylation and concomitant reduced expression of the ''[[capB]]-[[capC]]-[[capA]]-[[capE]]'' operon {{PubMed|24296669}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31700&redirect=T BSU31700]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/comQX.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11324]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''[[Domains]]:'''
* '''Modification:'''
** is synthesized as an inactive precursor, cleaved, and modified (prenylated) by [[ComQ]] prior to excretion {{PubMed|22878193}}
* '''[[Cofactors]]:'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[ComQ]]-[[ComX]] {{PubMed|22878193}}
* '''[[Localization]]:'''
** secreted (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU31700&redirect=T BSU31700]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P45453 P45453]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU31700]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[comQ]]-[[comX]]'' {{PubMed|1715859}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=comX_3255853_3256020_-1 comX] {{PubMed|22383849}}
* '''[[Sigma factor]]:''' [[SigA]] {{PubMed|1715859}}
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
The ComX --> surfactin signaling pathway is an example for paracrine signaling in bacteria
=References=
==Reviews==
<pubmed> 22024380 </pubmed>
==Original publications==
<pubmed>16407988,11133937,12067344,19202088,14679219,15564679,17240141,19605685, 1715859 22878193 24296669 22511326,21636272 24425772 24788106 25757097</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 08:46, 17 August 2015