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PfeT: Difference between revisions

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* '''Description:''' Fe(II) efflux pump, P1B4 -type ATPase, protects the cell against iron intoxication<br/><br/>
{{#bank: PfeT}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''zosA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ykvW''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || Fe(II) efflux pump
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || protection against toxic iron
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13850 pfeT]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=PfeT PfeT]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 68 kDa, 4.934 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1911 bp, 637 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[stoA]]'', ''[[papB]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU13850 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU13850 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU13850 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:ykvW_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=zosA_1451371_1453284_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:zosA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU13850]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[transporters/ other]]}},
{{SubtiWiki category|[[iron metabolism]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[PerR regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU13850
===Phenotypes of a mutant ===
** sensitivity to iron, this can be suppressed by low levels of Mn(II) {{PubMed|26261021}}
** reduced genetic competence, can be rescued by the addition of excess zinc {{PubMed|21813502}}
** reduced expression of ''[[comK]]'', control is exerted at the post-transcriptional level and can be rescued by the addition of excess zinc  {{PubMed|21813502}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU13850&redirect=T BSU13850]
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13325]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' ATP + H<sub>2</sub>O + Zn<sup>2+</sup>(In) = ADP + phosphate + Zn<sup>2+</sup>(Out) (according to Swiss-Prot) P-type zinc-transporting ATPase [http://www.ncbi.nlm.nih.gov/sites/entrez/12180919 PubMed]
* '''Protein family:''' Type IB subfamily (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU13850&redirect=T BSU13850]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31688 O31688]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU13850]
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.6.3.5 3.6.3.5]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''pfeT'' [http://www.ncbi.nlm.nih.gov/sites/entrez/12180919 PubMed]
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=zosA_1451371_1453284_1 pfeT] {{PubMed|22383849}}
* '''[[Sigma factor]]:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12180919 PubMed]
* '''Regulation:''' induced by hydrogen peroxide ([[PerR]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12180919 PubMed]
* '''Regulatory mechanism:'''
** [[PerR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12180919 PubMed]
* '''Additional information:'''
** A [[ncRNA]] is predicted between ''[[stoA]]'' and ''[[zosA]]'' {{PubMed|20525796}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>14563870,12426338,12486061,12180919,12779235, 21813502,12180919,12180919, 20525796 26261021</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 13:30, 13 August 2015