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RecR: Difference between revisions

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* '''Description:''' required for the formation of [[RecA]] DNA repair centers <br/><br/>
{{#bank: RecR}}
{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''recR''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''recM ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || formation of [[RecA]] DNA repair centers
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || [[DNA repair/ recombination]]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00210 recR]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RecR RecR]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 21 kDa, 5.301 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 594 bp, 198 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yaaK]]'', ''[[yaaL]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00210 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00210 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00210 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:recR_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recR_28867_29463_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:recR_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00210]]
|-
|}


__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA repair/ recombination]]}}
= This gene is a member of the following [[regulons]] =
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU00210
===Phenotypes of a mutant ===
* drastically reduced survival of mature dormant spores after exposure to ultrahigh vacuum desiccation and ionizing radiation that induce single strand (ss) DNA nicks and double-strand breaks (DSBs) {{PubMed|24285298}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00210&redirect=T BSU00210]
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10085]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
** required for the formation of [[RecA]] DNA repair centers (together with [[RecO]]) {{PubMed|24891441}}
* '''Protein family:''' recR family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[RecR]]-[[RecO]],  [[RecR]]:[[RecO]] molecular ratio of 2:1 (as judged from other bacteria  such as ''E. coli'' and ''Deinococcus radiodurans'') {{PubMed|17581636}}
* '''[[Localization]]:'''
** cytoplasm (homogeneous) [http://www.ncbi.nlm.nih.gov/sites/entrez/16479537 PubMed]
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00210&redirect=T BSU00210]
* '''Structure:'''
** [http://www.rcsb.org/pdb/explore/explore.do?structureId=2V1C 2V1C] (the [[RecR]]-[[RecO]] complex from ''Deinococcus radiodurans'', [[RecR]]: 52% identity, 78% similarity, [[RecO]]: 30%/ 58%)  {{PubMed|17581636}}
* '''UniProt:''' [http://www.uniprot.org/uniprot/P24277 P24277]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00210]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=recR_28867_29463_1 recR] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''  the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
== Reviews ==
<pubmed> 22933559 </pubmed>
== Original publications ==
<pubmed>12884008,17581636, 16479537 24285298 24285298 24891441 9157236 9108290</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 11:14, 10 August 2015