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* '''Description:'''  [[ribosomal protein]]  <br/><br/>
{{#bank: RplL}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''rplL''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes {{PubMed|23002217,12682299}}
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|style="background:#ABCDEF;" align="center"| '''Product''' || [[ribosomal protein]] L12 (BL9)
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || [[translation]]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01050 rplL]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=RplL RplL]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 12 kDa, 4.355 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 369 bp, 123 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[rplJ]]'', ''[[ybxB]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01050 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01050 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01050 DNA_with_flanks]
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|colspan="2" | '''Genetic context''' <br/> [[Image:rplL_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rplL_120607_120978_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rplL_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01050]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[translation]]}},
{{SubtiWiki category|[[essential genes]]}},
{{SubtiWiki category|[[membrane proteins]]}},
[[most abundant proteins]]
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[stringent response]]}}
=The [[L10-L12 regulon]]:=
* ''[[rplJ]]-[[rplL]]''
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU01050
===Phenotypes of a mutant ===
essential {{PubMed|23002217,12682299}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU01050&redirect=T BSU01050]
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10726]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' [[ribosomal protein]] L12P family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''[[Domains]]:'''
* '''Modification:'''
* '''[[Cofactors]]:'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[YsxC]]-[[RplL]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17981968 PubMed]
** [[FusA]]-[[RplL]] {{PubMed|23912278}}
** [[rplJ|L10]]-[[rplL|L12]]<sub>4</sub> {{PubMed|18247578}}
* '''[[Localization]]:''' membrane associated [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU01050&redirect=T BSU01050]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P02394 P02394]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU01050]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[rplJ]]-[[rplL]]'' {{PubMed|26101249}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rplL_120607_120978_1 rplL] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
** [[RelA]] dependent downregulation (Class I) during stringent response {{PubMed|11948165}}
** termination/ antitermination ([[rplJ|L10]]-[[rplL|L12]]<sub>4</sub> complex) {{PubMed|26101249}}
* '''Regulatory mechanism:'''
** [[rplJ|L10]]-[[rplL|L12]]<sub>4</sub> complex: transcription termination (attenuation) at excess of the complex (autorepression) {{PubMed|26101249}}
* '''Additional information:'''
** belongs to the 100 [[most abundant proteins]] {{PubMed|15378759}}
** number of protein molecules per cell (minimal medium with glucose and ammonium): 24809 {{PubMed|24696501}}
** number of protein molecules per cell (complex medium with amino acids, without glucose): 142727 {{PubMed|24696501}}
** number of protein molecules per cell (minimal medium with glucose and ammonium, exponential phase): 20697 {{PubMed|21395229}}
** number of protein molecules per cell (minimal medium with glucose and ammonium, early stationary phase after glucose exhaustion): 11499 {{PubMed|21395229}}
** number of protein molecules per cell (minimal medium with glucose and ammonium, late stationary phase after glucose exhaustion): 19060 {{PubMed|21395229}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>7657605,17981968,23912278,18763711, 19653700 23002217 15378759 18247578 26101249</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 09:31, 23 July 2015