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YuiC: Difference between revisions

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* '''Description:''' sporulation protein<br/><br/>
{{#bank: YuiC}}


{| align="right" border="1" cellpadding="2"
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|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yuiC''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
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|style="background:#ABCDEF;" align="center"| '''Product''' || sporulation protein
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|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32070 yuiC]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 24 kDa, 8.588 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 654 bp, 218 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yuiD]]'', ''[[yuiB]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU32070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU32070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU32070 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yuiC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yuiC_3298584_3299240_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yuiC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32070]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[sporulation proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[CodY regulon]]}},
{{SubtiWiki regulon|[[SigF regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU32070
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU32070&redirect=T BSU32070]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yuiC.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13968]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''Interactions:'''
* '''Localization:'''
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU32070&redirect=T BSU32070]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/O32108 O32108]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU32070]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''yuiC'' {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yuiC_3298584_3299240_-1 yuiC] {{PubMed|22383849}}
* '''[[Sigma factor]]:''' [[SigF]] {{PubMed|16497325}}
* '''Regulation:'''
** expressed early during [[sporulation]] in the forespore ([[SigF]]) {{PubMed|16497325}}
** repressed during growth in the presence of branched chain amino acids ([[CodY]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
* '''Regulatory mechanism:'''
** [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>16497325,12618455,,12107147, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 09:35, 15 July 2015