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YidC2: Difference between revisions

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* '''Description:''' Sec-independent membrane protein translocase, required for development of [[genetic competence]]<br/><br/>
{{#bank: YidC2}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yidC2''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yqjG, oxaAB ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' ||  no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || Sec-independent membrane protein translocase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || membrane insertion of proteins and [[protein secretion]]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 9.903 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 825 bp, 275 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[mifM]]'', ''[[yqjF]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU23890 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU23890 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU23890 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yqjG_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oxaAB_2483904_2484731_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yqjG_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU23890]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[protein secretion]]}},
{{SubtiWiki category|[[genetic competence]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[MifM regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU23890
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU23890&redirect=T BSU23890]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yqjG.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11736]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' YidC/Oxa1/Alb3 family {{PubMed|20800571,21194367,15802250}}
* '''Paralogous protein(s):''' [[SpoIIIJ]], one of the two proteins has to be present for viability [http://www.ncbi.nlm.nih.gov/sites/entrez/17114254 PubMed]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''[[Domains]]:'''
* '''Modification:'''
* '''[[Cofactors]]:'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
** membrane {{PubMed|22864117}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU23890&redirect=T BSU23890]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P54544 P54544]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU23890]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''  ''[[mifM]]-[[yidC2]]'' {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=oxaAB_2483904_2484731_1 yidC2] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
** repressed by large amounts of [[SpoIIIJ]], induced by small amounts of [[SpoIIIJ]] ([[MifM]]) {{PubMed|19779460}}
* '''Regulatory mechanism:'''
** [[MifM]]: "attenuation mechanism", an mRNA hairpin of the ''yqjG'' transcript unfold upon translation arrest of [[MifM]] at decreased [[SpoIIIJ]] levels {{PubMed|19779460}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>22688815 20800571,21194367,15802250 25947384</pubmed>
== Original publications ==
<pubmed>17114254, 15995216, 11889108, 12586834 19717609 19779460 21204254 22383849 22864117 24443530 25313395 25359772 25855636 25903689</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 08:13, 8 July 2015