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SpoVM: Difference between revisions

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* '''Description:''' required for normal spore cortex and coat synthesis, inhibits the proteolytic activity of [[FtsH]] (adaptor protein)<br/><br/>
{{#bank: SpoVM}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''spoVM''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || spore coat morphogenetic protein
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || spore cortex and coat synthesis
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15810 spoVM]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SpoVM SpoVM]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 2 kDa, 11.026 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 78 bp, 26 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yloS]]'', ''[[rpmB]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU15810 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU15810 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU15810 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:spoVM_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVM_1655446_1655526_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:spoVM_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU15810]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[sporulation proteins]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigE regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU15810
===Phenotypes of a mutant ===
* reduction of sporulation efficiency due to defects in spore coat and cortex assembly {{PubMed|22463703}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15810&redirect=T BSU15810]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/spoVM.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10776]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
** anchors the basement layer of the spore coat to the surface of the developing spore {{PubMed|22463703}}
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''[[Domains]]:''' contains an amphipathic alpha-helix
* '''Modification:'''
* '''[[Cofactors]]:'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[SpoIVA]]-[[SpoVM]]-[[SpoVID]] {{PubMed|19775244}}
** [[SpoVM]]-[[FtsH]] {{PubMed|10913836}}
* '''[[Localization]]:'''
** around the surface of the developing forespore {{PubMed|22463703}}
** spore membrane, recognizes membrane curvature [http://www.ncbi.nlm.nih.gov/sites/entrez/19265022 PubMed]
** spore coat (basement), localization depends on [[SpoIVA]] {{PubMed|22171814}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU15810&redirect=T BSU15810]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P37817 P37817]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU15810]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''spoVM'' {{PubMed|8231808}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=spoVM_1655446_1655526_1 spoVM] {{PubMed|22383849}}
* '''[[Sigma factor]]:''' [[SigE]] {{PubMed|8231808,15699190}}
* '''Regulation:'''
** expressed in mother cell during sporulation ([[SigE]], [[SpoIIID]]) {{PubMed|8231808,15699190,19265022}}
* '''Regulatory mechanism:''' 
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
== Reviews ==
<pubmed>23202530</pubmed>
== Original publications ==
<pubmed>10913836,18820968,8231808,9922240,19265022,12562810,9287010,17427285, 19775244 15699190 22463703 22171814 22882210 25625300</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 08:15, 1 April 2015