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UvrB: Difference between revisions

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* '''Description:''' excinuclease ABC (subunit B) <br/><br/>
{{#bank: UvrB}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''uvrB''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dinA, uvrA ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || excinuclease ABC (subunit B)
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || DNA repair after UV damage
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35170 uvrB]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=UvrB UvrB]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 76 kDa, 5.26 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1983 bp, 661 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[uvrA]]'', ''[[csbA]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU35170 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU35170 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU35170 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:uvrB_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=uvrB_3612945_3614930_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:uvrB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU35170]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[DNA repair/ recombination]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[LexA regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU35170
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU35170&redirect=T BSU35170]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/uvrBA.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10502]
=== Additional information===
* A mutation was found in this gene after evolution under relaxed selection for sporulation  {{PubMed|21821766}}
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' uvrB family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[UvrA]]-[[UvrB]] {{PubMed|16464004}}
** [[UvrB]]-[[UvrC]] {{PubMed|16464004}}
** [[UvrB]] interacts sequentially with [[UvrA]] and [[UvrC]], a complex of the three proteins was never observed {{PubMed|16464004}}
** [[UvrB]]-[[PcrA]] {{PubMed|24147116}}
* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU35170&redirect=T BSU35170]
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2NMV 2NMV] (bound to fluorescein-adducted DNA); [http://www.rcsb.org/pdb/explore.do?structureId=2D7D 2D7D] ternary complex involving UvrB* (a C-terminal truncation of full-length UvrB), a polythymine trinucleotide and ADP {{PubMed|16426634}}
* '''UniProt:''' [http://www.uniprot.org/uniprot/P37954 P37954]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU35170]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[uvrB]]-[[uvrA]]'' (according to [http://dbtbs.hgc.jp/COG/prom/uvrBA.html DBTBS])
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=uvrB_3612945_3614930_-1 uvrB] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
** induced upon DNA damage ([[LexA]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/8226626 PubMed]
* '''Regulatory mechanism:'''
** [[LexA]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/8226626 PubMed]
* '''Additional information:'''
=Biological materials =
* '''Mutant:''' GP1175 (del ''uvrAB''::''ermC'') (available in the [[Stülke]] lab)
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed>16464004 15927210 7801120  22933559 </pubmed>
== Original publications ==
<pubmed>8226626, 9555905 16426634 21821766 24147116 21145481 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 07:19, 3 March 2015