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GerAC: Difference between revisions

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* '''Description:''' lipoprotein, nutrient receptor, [[germination]] response to L-alanine <br/><br/>
{{#bank: GerAC}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''gerAC''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || nutrient receptor
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || [[germination]] response to L-alanine
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33070 gerAC]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=GerAC GerAC]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 42 kDa, 7.302 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1119 bp, 373 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[gerAB]]'', ''[[liaR]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33070 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33070 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33070 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:gerAC_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerAC_3393293_3394414_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:gerAC_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33070]]
|-
|}
__TOC__
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<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[germination]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[SigF regulon]]}},
{{SubtiWiki regulon|[[SigG regulon]]}},
{{SubtiWiki regulon|[[SpoVT regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU33070
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU33070&redirect=T BSU33070]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/gerAABC.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10387]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' gerABKC lipoprotein family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''[[Domains]]:'''
** has an N-terminal signal sequence, lipidated on a Cys residue adjacent to the signal peptide {{PubMed|23335419}}
* '''Modification:'''
* '''[[Cofactors]]:'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[GerAA]]-[[GerAB]]-[[GerAC]] (tentative receptor complex)  {{PubMed|21378181,21378197}}
** [[GerAC]] is part of the [[germinosome]] in the spore inner membrane {{PubMed|21696470}}
** [[GerAC]]-[[Lgt]] to fix [[GerAC]] to diacylglycerol in the membrane {{PubMed|15126458}}
* '''[[Localization]]:''' cell membrane (according to Swiss-Prot)
** outer surface of the inner spore membrane {{PubMed|23335419,21378181}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU33070&redirect=T BSU33070]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P07870 P07870]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU33070]
* '''E.C. number:'''
=== Additional information===
* 1,100 molecules are present per spore {{PubMed|23749970}}
=Expression and regulation=
* '''Operon:''' ''[[gerAA]]-[[gerAB]]-[[gerAC]]'' {{PubMed|3110007}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=gerAC_3393293_3394414_1 gerAC] {{PubMed|22383849}}
* '''[[Sigma factor]]:''' [[SigG]] {{PubMed|15699190}}, [[SigF]] {{PubMed|16497325}}
* '''Regulation:'''
** expressed during sporulation in the forespore ([[SigF]], [[SigG]], [[SpoVT]]) {{PubMed|16497325,15699190,8755877}}
** expression level depends on sporulation conditions (medim composition, temperature) {{PubMed|22327596}}
* '''Regulatory mechanism:'''
** [[SpoVT]]: transcription repression {{PubMed|8755877}}
* '''Additional information:'''
** 1,100 molecules are present per spore {{PubMed|23749970}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>3110007,17573930,12670969,2110996,15774895,16497325,16352818, 8755877 21378181,21378197 21696470 15126458 22327596 22493018 23335419 23396907 22343299,16740944, 23749970 24752279 24916603 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 15:24, 14 November 2014