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| * '''Description:''' transcriptional repressor of the ''[[sdpR]]-[[sdpI]]'' operon <br/><br/>
| | {{#bank: SdpR}} |
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| {| align="right" border="1" cellpadding="2"
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| |style="background:#ABCDEF;" align="center"|'''Gene name'''
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| |''sdpR''
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| |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yvbA ''
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| |-
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| |style="background:#ABCDEF;" align="center"| '''Essential''' || no
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| |style="background:#ABCDEF;" align="center"| '''Product''' || transcriptional regulator (ArsR family)
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| |-
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| |style="background:#ABCDEF;" align="center"|'''Function''' || regulation of protection against [[SdpC]]
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| |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33790 sdpR]
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| |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=SdpR SdpR]
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| |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 10 kDa, 7.328
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| |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 270 bp, 90 aa
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| |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[sdpI]]'', ''[[opuCD]]''
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| |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33790 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33790 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33790 DNA_with_flanks]
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| |colspan="2" | '''Genetic context''' <br/> [[Image:yvbA_context.gif]]
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| <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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| |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sdpR_3467054_3467326_-1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:sdpR_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33790]]
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| |}
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| __TOC__
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| <br/><br/>
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| = [[Categories]] containing this gene/protein =
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| {{SubtiWiki category|[[transcription factors and their control]]}},
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| {{SubtiWiki category|[[toxins, antitoxins and immunity against toxins]]}}
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|
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| = This gene is a member of the following [[regulons]] =
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| {{SubtiWiki regulon|[[AbrB regulon]]}},
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| {{SubtiWiki regulon|[[SdpR regulon]]}}
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| =The [[SdpR regulon]]:=
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| * ''[[fadM]]-[[fadN]]-[[fadA]]-[[fadE]]'', ''[[sdpR]]-[[sdpI]]''
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| =The gene=
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| === Basic information ===
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| * '''Locus tag:''' BSU33790
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| ===Phenotypes of a mutant ===
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| === Database entries ===
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| * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU33790&redirect=T BSU33790]
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| * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/sdpRI.html]
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| * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG14078]
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| === Additional information===
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| =The protein=
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| === Basic information/ Evolution ===
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| * '''Catalyzed reaction/ biological activity:'''
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| * '''Protein family:'''
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| * '''Paralogous protein(s):'''
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| === Extended information on the protein ===
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| * '''Kinetic information:'''
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| * '''Domains:'''
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| * '''Modification:'''
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| * '''Cofactor(s):'''
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| * '''Effectors of protein activity:''' [[SdpI]] binds and sequesters [[SdpR]] if extracellular [[SdpC]] is present, this results in induction of the ''[[sdpR]]-[[sdpI]]'' operon {{PubMed|16469701}}
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| * '''[[SubtInteract|Interactions]]:'''
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| ** [[SdpI]]-[[SdpR]] {{PubMed|16469701}}
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| * '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
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| === Database entries ===
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| * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU33790&redirect=T BSU33790]
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| * '''Structure:'''
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| * '''UniProt:''' [http://www.uniprot.org/uniprot/O32242 O32242]
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| * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU33790]
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| * '''E.C. number:'''
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| === Additional information===
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| =Expression and regulation=
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| * '''Operon:''' ''[[sdpR]]-[[sdpI]]'' {{PubMed|12817086}}
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| * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=sdpR_3467054_3467326_-1 sdpR] {{PubMed|22383849}}
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| * '''Sigma factor:''' [[SigA]] {{PubMed|16469701}}
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| * '''Regulation:'''
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| ** repressed during logrithmic growth ([[AbrB]]) {{PubMed|16469701}}
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| ** induced by extracellular [[SdpC]] ([[SdpR]]) {{PubMed|16469701}}
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| * '''Regulatory mechanism:'''
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| ** [[AbrB]]: transcription repression {{PubMed|16469701}}
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| ** [[SdpR]]: transcription repression {{PubMed|16469701}}
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| * '''Additional information:'''
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| =Biological materials =
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| * '''Mutant:'''
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| * '''Expression vector:'''
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| * '''lacZ fusion:'''
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| * '''GFP fusion:'''
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| * '''two-hybrid system:'''
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| * '''Antibody:'''
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| =Labs working on this gene/protein=
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| =Your additional remarks=
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| =References=
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| ==Reviews==
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| <pubmed>20955377 </pubmed>
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| ==Original Publications==
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| <pubmed>12817086,16469701,10960106,,, </pubmed>
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| [[Category:Protein-coding genes]]
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