Revision as of 07:57, 10 June 2014

Description: LD-carboxypeptidase

Gene name	ldcB
Synonyms	yodJ
Essential	no
Product	LD-carboxypeptidase
Function	cell wall synthesis
*Gene expression levels in SubtiExpress*: yodJ
MW, pI	30 kDa, 5.84
Gene length, protein length	819 bp, 273 aa
Immediate neighbours	yodI, deoD
Sequences	Protein DNA DNA_with_flanks
Genetic context This image was kindly provided by SubtiList
Expression at a glance PubMed

Categories containing this gene/protein

cell wall synthesis

This gene is a member of the following regulons

The gene

Basic information

Locus tag: BSU19620

Phenotypes of a mutant

Database entries

BsubCyc: BSU19620

DBTBS entry: no entry

SubtiList entry: [1]

Additional information

The protein

Basic information/ Evolution

Catalyzed reaction/ biological activity:
- trimming of cell wall peptides (tetrapeptides to tripeptides) PubMed

Protein family:

Paralogous protein(s):

Extended information on the protein

Kinetic information:

Domains:

Modification:

Cofactor(s):

Effectors of protein activity:

Interactions:

Localization:
- extracellular (signal peptide) PubMed

Database entries

BsubCyc: BSU19620

Structure:

UniProt: O34866

KEGG entry: [2]

E.C. number:

Additional information

Expression and regulation

Operon:

Expression browser: yodJ PubMed

Sigma factor:

Regulation:

Regulatory mechanism:

Additional information:

Biological materials

Mutant:

Expression vector:

lacZ fusion:

GFP fusion:

two-hybrid system:

Antibody:

Labs working on this gene/protein

Your additional remarks

References

@@ Line 1: / Line 1: @@
-* '''Description:''' similar to D-alanyl-D-alanine carboxypeptidase <br/><br/>
+* '''Description:''' LD-carboxypeptidase <br/><br/>
 {| align="right" border="1" cellpadding="2"
 |-
 |style="background:#ABCDEF;" align="center"|'''Gene name'''
-|''yodJ''
+|''ldcB''
 |-
-|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
+|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yodJ ''
 |-
 |style="background:#ABCDEF;" align="center"| '''Essential''' || no
 |-
-|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
+|style="background:#ABCDEF;" align="center"| '''Product''' || LD-carboxypeptidase
 |-
-|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
+|style="background:#ABCDEF;" align="center"|'''Function''' || [[cell wall synthesis]]
 |-
 |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU19620 yodJ]
@@ Line 38: / Line 38: @@
 = [[Categories]] containing this gene/protein =
-{{SubtiWiki category|[[cell wall/ other]]}}
+{{SubtiWiki category|[[cell wall synthesis]]}}
 = This gene is a member of the following [[regulons]] =
@@ Line 59: / Line 59: @@
 === Additional information===
 =The protein=
@@ Line 68: / Line 65: @@
 * '''Catalyzed reaction/ biological activity:'''
+** trimming of cell wall peptides (tetrapeptides to tripeptides) {{PubMed|24909784}}
 * '''Protein family:'''
@@ Line 137: / Line 135: @@
 =References=
-<pubmed>18957862, </pubmed>
+<pubmed>18957862, 24909784 </pubmed>
 [[Category:Protein-coding genes]]