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NiaP: Difference between revisions

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* '''Description:''' nicotinate transporter <br/><br/>
{{#bank: NiaP}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yceI''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || nicotinate transporter
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|style="background:#ABCDEF;" align="center"|'''Function''' || uptake of niacin
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02950 niaP]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=NiaP NiaP]'''
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 9.502 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1200 bp, 400 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yceH]]'', ''[[yceJ]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU02950 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU02950 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU02950 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yceI_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yceI_317725_318927_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:niaP_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU02950]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[transporters/ other]]}},
{{SubtiWiki category|[[biosynthesis of cofactors]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[NadR regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU02950
===Phenotypes of a mutant ===
* more sensitive to nisin {{PubMed|23980836}}
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU02950&redirect=T BSU02950]
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12773]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' MFS transporter {{PubMed|18276644}} 
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:''' 10 membrane-spanning domains {{PubMed|18276644}} 
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:''' cell membrane [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed]
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU02950&redirect=T BSU02950]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34691 O34691]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU02950]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[niaP]]'' {{PubMed|22383849}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yceI_317725_318927_1 niaP] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
** repressed in the presence of nicotinic acid ([[NadR]]) {{PubMed|18276644}} 
* '''Regulatory mechanism:'''
** [[NadR]]: transcription repression {{PubMed|18276644}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews==
<pubmed> 21953179 </pubmed>
==Original publications==
<pubmed>18763711, 18276644 23980836 22383849</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 15:13, 7 June 2014