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PucH: Difference between revisions

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* '''Description:''' allantoinase <br/><br/>
{{#bank: PucH}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''pucH''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yunH ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || allantoinase
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || purine utilization
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32410 pucH]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=pucH pucH]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 48 kDa, 5.062 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1338 bp, 446 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yunG]]'', ''[[pucR]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU32410 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU32410 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU32410 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:pucH_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=pucH_3327247_3328587_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:pucH_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32410]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[utilization of nucleotides]]}},
{{SubtiWiki category|[[Sporulation#Sporulation_proteins/_other|sporulation proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[PucR regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU32410
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU32410&redirect=T BSU32410]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/pucH.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13982]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' (S)-allantoin + H<sub>2</sub>O = allantoate (according to Swiss-Prot)
* '''Protein family:''' Allantoinase subfamily (according to Swiss-Prot)
* '''Paralogous protein(s):''' [[PyrC]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU32410&redirect=T BSU32410]
* '''Structure:''' [http://www.rcsb.org/pdb/cgi/explore.cgi?pdbId=3HM7 3HM7] (from ''Bacillus halodurans'', 44% identity, 65% similarity)
* '''UniProt:''' [http://www.uniprot.org/uniprot/O32137 O32137]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU32410]
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.5.2.5 3.5.2.5]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''pucH'' {{PubMed|12029039}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=pucH_3327247_3328587_-1 pucH] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] {{PubMed|12029039}}
* '''Regulation:'''
** induced in the presence of purine nucleotides (inducer: allantoin) ([[PucR]]) {{PubMed|12029039}}
* '''Regulatory mechanism:'''
** [[PucR]]: transcription activation {{PubMed|12029039}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>11344136,,12029039, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 12:54, 24 April 2014