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* '''Description:''' methylenetetrahydrofolate dehydrogenase (NADP) <br/><br/>
{{#bank: FolD}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''folD''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yqiA ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || yes [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
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|style="background:#ABCDEF;" align="center"| '''Product''' || methylenetetrahydrofolate dehydrogenase (NADP)
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|style="background:#ABCDEF;" align="center"|'''Function''' || formylation of Met-tRNA(fMet)
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24310 folD]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 5.6 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 849 bp, 283 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yqiB]]'', ''[[nusB]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU24310 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU24310 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU24310 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:folD_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=folD_2528404_2529255_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:folD_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU24310]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[translation]]}},
{{SubtiWiki category|[[essential genes]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[PurR regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU24310
===Phenotypes of a mutant ===
essential [http://www.ncbi.nlm.nih.gov/pubmed/12682299 PubMed]
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU24310&redirect=T BSU24310]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/nusB-folD.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11711]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' 5,10-methylenetetrahydrofolate + NADP<sup>+</sup> = 5,10-methenyltetrahydrofolate + NADPH (according to Swiss-Prot)
* '''Protein family:''' tetrahydrofolate dehydrogenase/cyclohydrolase family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU24310&redirect=T BSU24310]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P54382 P54382]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU24310]
* '''E.C. number:''' [http://www.expasy.org/enzyme/1.5.1.5 1.5.1.5]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[nusB]]-[[folD]]'' {{PubMed|2536750,11591660}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=folD_2528404_2529255_-1 folD] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
** repressed in the presence of purine nucleotides ([[PurR]]) {{PubMed|2536750,11591660}}
* '''Regulatory mechanism:'''
** [[PurR]]: transcription repression (molecular inducer: PRPP) {{PubMed|2536750,11591660}}
* '''Additional information:'''
** number of protein molecules per cell (minimal medium with glucose and ammonium): 1205 {{PubMed|24696501}}
** number of protein molecules per cell (complex medium with amino acids, without glucose): 6774 {{PubMed|24696501}}
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>11591660,,19171795,11591660, 19171795 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:06, 17 April 2014