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BglH: Difference between revisions

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* '''Description:''' phospho-beta-glucosidase <br/><br/>
{{#bank: BglH}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''bglH''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || phospho-beta-glucosidase
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|style="background:#ABCDEF;" align="center"|'''Function''' || salicin utilization
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39260 bglH]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=bglH bglH]'''
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 53 kDa, 4.957 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1407 bp, 469 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxiE]]'', ''[[bglP]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU39260 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU39260 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU39260 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:bglH_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bglH_4032346_4033755_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:bglH_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU39260]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[utilization of specific carbon sources]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[CcpA regulon]]}},
{{SubtiWiki regulon|[[LicT regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU39260
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU39260&redirect=T BSU39260]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/bglPH-yxiE.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10935]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' 6-phospho-beta-D-glucosyl-(1,4)-D-glucose + H<sub>2</sub>O = D-glucose + D-glucose 6-phosphate (according to Swiss-Prot)
* '''Protein family:''' glycosyl hydrolase 1 family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU39260&redirect=T BSU39260]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P40740 P40740]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU39260]
* '''E.C. number:''' [http://www.expasy.org/enzyme/3.2.1.86 3.2.1.86]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[bglP]]-[[bglH]]-[[yxiE]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/7883710 PubMed]
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bglH_4032346_4033755_-1 bglH] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] {{PubMed|7559347}}
* '''Regulation:'''
** repressed by glucose ([[CcpA]], [[LicT]]) {{PubMed|7559347}}
** induced by salicin  ([[LicT]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/7883710 PubMed]
* '''Regulatory mechanism:'''
** [[CcpA]]: transcription repression, ([[CcpA]] binding site overlaps -35 region) {{PubMed|7559347}}
** [[LicT]]-dependent [[RNA switch]] (antitermination, lack of [[LicT]]-dependent antitermination in the presence of gucose due to the requirement of [[LicT]] to be phosphorylated by [[PtsH| HPr]] {{PubMed|8626332}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>14652714,16672620,15139916,,7883710 7559347, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:03, 17 April 2014