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RbfA: Difference between revisions

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* '''Description:''' ribosome-binding factor A <br/><br/>
{{#bank: RbfA}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''rbfA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ymxE, ylxO ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || ribosome-binding factor A
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|style="background:#ABCDEF;" align="center"|'''Function''' || translation
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16650 rbfA]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 13 kDa, 9.338 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 351 bp, 117 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ylxP]]'', ''[[truB]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU16650 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU16650 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU16650 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:rbfA_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rbfA_1736451_1736804_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:rbfA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU16650]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[translation]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[stringent response]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU16650
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU16650&redirect=T BSU16650]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/ylxS-nusA-ylxRQ-infB-ylxP-rbfA.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10270]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' rbfA family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:''' cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU16650&redirect=T BSU16650]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P32731 P32731]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU16650]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[ylxS]]-[[nusA]]-[[ylxR]]-[[ylxQ]]-[[infB]]-[[ylxP]]-[[rbfA]]'' {{PubMed|8491709}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=rbfA_1736451_1736804_1 rbfA] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] {{PubMed|8491709}}
* '''Regulation:'''
** [[RelA]] dependent downregulation (Class I) during stringent response {{PubMed|11948165}}
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>8491709 11948165</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 10:02, 17 April 2014