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| * '''Description:''' dipeptide [[ABC transporter]] (dipeptide-binding protein) <br/><br/>
| | {{#bank: DppE}} |
| {| align="right" border="1" cellpadding="2" | |
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| |style="background:#ABCDEF;" align="center"|'''Gene name'''
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| |''dppE''
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| |style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''dciAE ''
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| |-
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| |style="background:#ABCDEF;" align="center"| '''Essential''' || no
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| |-
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| |style="background:#ABCDEF;" align="center"| '''Product''' || dipeptide [[ABC transporter]] (dipeptide-binding protein)
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| |style="background:#ABCDEF;" align="center"|'''Function''' || uptake of dipeptides
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| |colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12960 dppE]
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| |colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=DppE DppE]
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| |colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=dppE dppE]'''
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| |style="background:#ABCDEF;" align="center"| '''MW, pI''' || 62 kDa, 5.523
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| |style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1647 bp, 549 aa
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| |style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dppD]]'', ''[[ykfA]]''
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| |style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU12960 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU12960 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU12960 DNA_with_flanks]
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| |colspan="2" | '''Genetic context''' <br/> [[Image:dppE_context.gif]]
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| <div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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| |colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dppE_1364151_1365800_1 Expression at a glance]'''   {{PubMed|22383849}}<br/>[[Image:dppE_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU12960]]
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| |-
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| |}
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| __TOC__
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| <br/><br/><br/><br/>
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| = [[Categories]] containing this gene/protein =
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| {{SubtiWiki category|[[ABC transporters]]}},
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| {{SubtiWiki category|[[utilization of nitrogen sources other than amino acids]]}},
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| {{SubtiWiki category|[[membrane proteins]]}}
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| = This gene is a member of the following [[regulons]] =
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| {{SubtiWiki regulon|[[CodY regulon]]}}
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| =The gene=
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| === Basic information ===
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| * '''Locus tag:''' BSU12960
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| ===Phenotypes of a mutant ===
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| === Database entries ===
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| * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU12960&redirect=T BSU12960]
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| * '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/dppABCDE.html]
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| * '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10846]
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| === Additional information===
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| =The protein=
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| === Basic information/ Evolution ===
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| * '''Catalyzed reaction/ biological activity:'''
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| * '''Protein family:''' bacterial solute-binding protein 5 family (according to Swiss-Prot)
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| * '''Paralogous protein(s):''' [[OppA]]
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| === Extended information on the protein ===
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| * '''Kinetic information:'''
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| * '''Domains:'''
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| * '''Modification:'''
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| * '''Cofactor(s):'''
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| * '''Effectors of protein activity:'''
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| * '''[[SubtInteract|Interactions]]:'''
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| ** ([[DppD]]-[[YkfD]])-([[DppB]]-[[DppC]])-[[DppE]] {{PubMed|10092453}}
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| * '''[[Localization]]:''' attached to the cell membrane (via [[DppB]]-[[DppC]]) {{PubMed|10092453,18763711}}
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| === Database entries ===
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| * '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU12960&redirect=T BSU12960]
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| * '''Structure:'''
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| * '''UniProt:''' [http://www.uniprot.org/uniprot/P26906 P26906]
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| * '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU12960]
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| * '''E.C. number:'''
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| === Additional information===
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| =Expression and regulation=
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| * '''Operon:''' ''[[dppA]]-[[dppB]]-[[dppC]]-[[dppD]]-[[dppE]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/1766371 PubMed]
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| * '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=dppE_1364151_1365800_1 dppE] {{PubMed|22383849}}
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| * '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/1766371 PubMed]
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| * '''Regulation:'''
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| ** repressed during growth in the presence of branched chain amino acids ([[CodY]]) {{PubMed|7783641,12618455}}
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| * '''Regulatory mechanism:'''
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| ** [[CodY]]: transcription repression {{PubMed|7783641,12618455}}
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| * '''Additional information:'''
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| =Biological materials =
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| * '''Mutant:''' GP1110 (spc), available in [[Stülke]] lab
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| ** 1A737 ( ''dppE''::''kan''), {{PubMed|1766370}}, available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A737&Search=1A737 BGSC]
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| * '''Expression vector:'''
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| * '''lacZ fusion:'''
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| * '''GFP fusion:'''
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| * '''two-hybrid system:'''
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| * '''Antibody:'''
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| =Labs working on this gene/protein=
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| =Your additional remarks=
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| =References=
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| <pubmed>12618455,10092453,1766371,,7783641,1766371,18763711, </pubmed>
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| [[Category:Protein-coding genes]]
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