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* '''Description:''' [[cytochrome P450]] enzyme <br/><br/>
{{#bank: BioI}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''bioI''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
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|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || [[cytochrome P450]] enzyme
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|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of biotin
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30190 bioI]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=BioI BioI]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=bioI bioI]'''
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 44 kDa, 6.2 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1185 bp, 395 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[ytbQ]]'', ''[[bioB]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU30190 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU30190 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU30190 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:bioI_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioI_3089226_3090413_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:bioI_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU30190]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[biosynthesis of cofactors]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[BirA regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU30190
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU30190&redirect=T BSU30190]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/bioWAFDBI-ytbQ.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11528]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' formation of pimelic acid via a multiple-step oxidative cleavage of long-chain fatty acids
* '''Protein family:''' [[cytochrome P450]] family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[Fer]]-[[BioI]] {{PubMed|12538057}}
** [[YkuP]]-[[BioI]] {{PubMed|15449930}}
** [[AcpA]]-[[BioI]] {{PubMed|18838690}}
* '''[[Localization]]:'''
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU30190&redirect=T BSU30190]
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=3EJB 3EJB], [http://www.rcsb.org/pdb/explore.do?structureId=3EJE 3EJE] (complex with [[AcpA]]) {{PubMed|18838690}}
* '''UniProt:''' [http://www.uniprot.org/uniprot/P53554 P53554]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU30190]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[bioW]]-[[bioA]]-[[bioF]]-[[bioD]]-[[bioB]]-[[bioI]]-[[ytbQ]]'' {{PubMed|8763940,8892842}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=bioI_3089226_3090413_-1 bioI] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
** repressed in the presence of biotin ([[BirA]]) {{PubMed|8763940,8892842}}
* '''Regulatory mechanism:'''
** [[BirA]]: transcription repression {{PubMed|8763940,8892842}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
==Reviews: {{PubMed|21437340}}==
==Original publications==
<pubmed> 18838690 ,8763940,8892842,15449931, 15449930 12538057 20658980 11368323 11472016 14737344 12943422 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 09:51, 17 April 2014