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HemB: Difference between revisions

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* '''Description:''' porphobilinogen synthase <br/><br/>
{{#bank: HemB}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''hemB''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || porphobilinogen synthase
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|style="background:#ABCDEF;" align="center"|'''Function''' || heme biosynthesis
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28130 hemB]
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|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=HemB HemB]'''
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 36 kDa, 4.98 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 972 bp, 324 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[hemL]]'', ''[[hemD]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU28130 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU28130 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU28130 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:hemB_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
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|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=hemB_2874202_2875176_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:hemB_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU28130]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[biosynthesis of cofactors]]}},
{{SubtiWiki category|[[phosphoproteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[PerR regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU28130
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU28130&redirect=T BSU28130]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/hemAXCDBL.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10344]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:''' 2 5-aminolevulinate = porphobilinogen + 2 H<sub>2</sub>O (according to Swiss-Prot)
* '''Protein family:''' ALADH family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
** phosphorylated on Arg-217 {{PubMed|22517742}}
* '''Cofactor(s):''' zinc
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
** cytoplasm (according to Swiss-Prot)
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU28130&redirect=T BSU28130]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P30950 P30950]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU28130]
* '''E.C. number:''' [http://www.expasy.org/enzyme/4.2.1.24 4.2.1.24]
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[hemA]]-[[hemX]]-[[hemC]]-[[hemD]]-[[hemB]]-[[hemL]]'' {{PubMed|1672867}}
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=hemB_2874202_2875176_-1 hemB] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] {{PubMed|1672867}}
* '''Regulation:'''
** induced by hydrogen peroxide ([[PerR]]) {{PubMed|11532148}}
* '''Regulatory mechanism:'''
** [[PerR]]: transcription repression {{PubMed|11532148}}
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>10217486 11532148, ,1672867,4214010 ,804803 12926268 20823524 , 22517742</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 09:39, 17 April 2014