Jump to content

FeuA: Difference between revisions

From SubtiWiki
No edit summary
No edit summary
 
Line 1: Line 1:
* '''Description:''' [[ABC transporter]] for the siderophores Fe-enterobactin and Fe-bacillibactin (binding protein), with [[YusV]] as ATPase <br/><br/>
{{#bank: FeuA}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''feuA''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || [[ABC transporter]] for the siderophores Fe-enterobactin <br/>and Fe-bacillibactin (binding protein)
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || [[acquisition of iron]]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01630 feuA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://subtiwiki.uni-goettingen.de/interact/ ''Subt''Interact]''': [http://subtiwiki.uni-goettingen.de/interact/index.php?protein=FeuA FeuA]
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/subtipathways/search.php?enzyme=feuA feuA]'''
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 34 kDa, 8.018 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 951 bp, 317 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[feuB]]'', ''[[btr]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU01630 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU01630 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU01630 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:feuA_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=feuA_182370_183323_-1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:feuA_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU01630]]
|-
|}
__TOC__
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/>
<br/><br/><br/><br/><br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[ABC transporters]]}},
{{SubtiWiki category|[[acquisition of iron]]}},
{{SubtiWiki category|[[iron metabolism]]}},
{{SubtiWiki category|[[membrane proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[Btr regulon]]}},
{{SubtiWiki regulon|[[CitB regulon]]}},
{{SubtiWiki regulon|[[Fur regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU01630
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU01630&redirect=T BSU01630]
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/feuABC-ybbA.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10835]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/biological activity:'''
Substrate binding protein for the triscatecholate siderophores ferri-bacillibactin and ferri-enterobactin and part of the [[FeuA]]-[[FeuB]]-[[FeuC]]-[[YusV]] ATP-binding cassette-type transporter. Furthermore ferric complexes of L-norepinephrine are bound by this protein.
* '''Protein family:''' Fe/B12 periplasmic-binding domain (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
Two independent non-symmetric globular domains, connected by a long alpha-helix (residues 143-164 of the mature protein).
* '''Modification:'''
** FeuA is a lipoprotein with a N-acetyl-S-diacyl-glyceryl-cysteine structure  {{PubMed|22303020}}
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** [[YusV]]-([[FeuB]]-[[FeuC]])-[[FeuA]] {{PubMed|10092453}}
* '''[[Localization]]:'''
** associated to the membrane (lipoprotein) {{PubMed|22303020}}
** extracellular (signal peptide) [http://www.ncbi.nlm.nih.gov/pubmed/18957862 PubMed]
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU01630&redirect=T BSU01630]
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=2PHZ 2PHZ], [http://www.rcsb.org/pdb/explore.do?structureId=2WI8 2WI8], [http://www.rcsb.org/pdb/explore.do?structureId=2WHY 2WHY] (complex with ferri-bacillibactin), [http://www.rcsb.org/pdb/explore.do?structureId=2XUZ 2XUZ] (complex with ferri-enterobactin), [http://www.rcsb.org/pdb/explore.do?structureId=2XV1 2XV1] (complex with ferric mecam)
* '''UniProt:''' [http://www.uniprot.org/uniprot/P40409 P40409]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU01630]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[feuA]]-[[feuB]]-[[feuC]]-[[ybbA]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/12354229 PubMed]
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=feuA_182370_183323_-1 feuA] {{PubMed|22383849}}
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/17725565 PubMed]
* '''Regulation:'''
** repressed in the presence of iron ([[Fur]], [[CitB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12354229 PubMed]
** induced in the presence of iron chelators bacillibactin or enterobactin ([[Btr]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/17725565 PubMed]
* '''Regulatory mechanism:'''
** [[Fur]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12354229 PubMed]
** [[CitB]]: binding to the iron responsive element in the absence of iron
** [[Btr]]: transcription activation in the presence of the co-activators bacillibactin or enterobactin [http://www.ncbi.nlm.nih.gov/sites/entrez/17725565 PubMed]
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
'''Additional publications:''' {{PubMed|21802011}}
<pubmed>20086155,19746494,19673474,14563870,16672620,10092453,16889643,17725565,12354229,18957862 18763711 22303020 </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 09:38, 17 April 2014