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YaaK: Difference between revisions

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* '''Description:''' unknown <br/><br/>
{{#bank: YaaK}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yaaK''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00200 yaaK]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 11 kDa, 4.536 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 321 bp, 107 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[dnaX]]'', ''[[recR]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU00200 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU00200 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU00200 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yaaK_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaK_28529_28852_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yaaK_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU00200]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[proteins of unknown function]]}}
= This gene is a member of the following [[regulons]] =
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU00200
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00200&redirect=T BSU00200]
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG10084]
=== Additional information===
* The ''E.coli'' homolog: [http://ecoliwiki.net/colipedia/index.php/ybaB ''ybaB'']
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' UPF0133 family (according to Swiss-Prot)
* '''Paralogous protein(s):'''
* '''The corresponding gene in ''E. coli'':''' [http://ecoliwiki.net/colipedia/index.php/ybaB EcoliWiki] {{PubMed|19594923}}
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU00200&redirect=T BSU00200]
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/P24281 P24281]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU00200]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yaaK_28529_28852_1 yaaK] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''  the mRNA is very stable (half-life > 15 min) [http://www.ncbi.nlm.nih.gov/sites/entrez/12884008 PubMed]
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>12884008,19594923, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 09:30, 17 April 2014