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YncF: Difference between revisions

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* '''Description:''' dUTPase <br/><br/>
{{#bank: YncF}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yncF''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || dUTPase
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|style="background:#ABCDEF;" align="center"|'''Function''' || nucleotide metabolism
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17660 yncF]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 16 kDa, 5.098 
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|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 432 bp, 144 aa
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|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yncE]]'', ''[[cotU]]''
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|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU17660 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU17660 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU17660 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yncF_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yncF_1900080_1900514_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yncF_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU17660]]
|-
|}
__TOC__
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[nucleotide metabolism/ other]]}}
= This gene is a member of the following [[regulons]] =
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU17660
===Phenotypes of a mutant ===
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU17660&redirect=T BSU17660]
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13437]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):''' [[YosS]]
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
** forms homotrimers {{PubMed|23897460}}
* '''[[Localization]]:'''
=== Database entries ===
* '''BsubCyc:''' [http://bsubcyc.org/BSUB/NEW-IMAGE?type=NIL&object=BSU17660&redirect=T BSU17660]
* '''Structure:'''
** [http://www.rcsb.org/pdb/explore/explore.do?pdbId=2XCD 2XCD] {{PubMed|23897460}}
** [http://www.rcsb.org/pdb/explore/explore.do?pdbId=2XCE 2XCE] (complex with dUpnhpp) {{PubMed|23897460}}
* '''UniProt:''' [http://www.uniprot.org/uniprot/O31801 O31801]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU17660]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:'''
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yncF_1900080_1900514_1 yncF] {{PubMed|22383849}}
* '''[[Sigma factor]]:'''
* '''Regulation:'''
* '''Regulatory mechanism:'''
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed> 19342774 20823546 22383849</pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 09:25, 17 April 2014