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YvaM: Difference between revisions

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* '''Description:''' similar to hydrolase <br/><br/>
{{#bank: YvaM}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''yvaM''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || unknown
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || unknown
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33640 yvaM]
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|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 29 kDa, 8.995 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 768 bp, 256 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[secG]]'', ''[[yvzC]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU33640 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU33640 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU33640 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yvaM_context.gif]]
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div>
|-
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvaM_3455472_3456242_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:yvaM_expression.png|500px|link=http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU33640]]
|-
|}
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= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[poorly characterized/ putative enzymes]]}},
{{SubtiWiki category|[[sporulation proteins]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[RghR regulon]]}}
=The gene=
=== Basic information ===
* '''Locus tag:''' BSU33640
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yvaM.html]
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG14068]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:''' AB hydrolase superfamily (according to Swiss-Prot)
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''Interactions:'''
* '''Localization:'''
=== Database entries ===
* '''Structure:'''
* '''UniProt:''' [http://www.uniprot.org/uniprot/O32234 O32234]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU33640]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''yvaM'' (according to [http://dbtbs.hgc.jp/COG/prom/yvaM.html DBTBS])
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=yvaM_3455472_3456242_1 yvaM] {{PubMed|22383849}}
* '''Sigma factor:'''
* '''Regulation:'''
** repressed by [[RghR]] [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
* '''Regulatory mechanism:'''
** [[RghR]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/16553878 PubMed]
* '''Additional information:'''
=Biological materials =
* '''Mutant:'''
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>16553878, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:46, 2 April 2014