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MdtR: Difference between revisions

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* '''Description:''' transcription repressor of the multidrug-resistance ''[[mdtR]]-[[mdtP]]'' operon <br/><br/>
{{#bank: MdtR}}


{| align="right" border="1" cellpadding="2"
|-
|style="background:#ABCDEF;" align="center"|'''Gene name'''
|''mdtR''
|-
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yusO''
|-
|style="background:#ABCDEF;" align="center"| '''Essential''' || no
|-
|style="background:#ABCDEF;" align="center"| '''Product''' || transcription repressor (MarR family)
|-
|style="background:#ABCDEF;" align="center"|'''Function''' || regulation of the multidrug-resistance ''[[mdtR]]-[[mdtP]]'' operon
|-
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://subtiwiki.uni-goettingen.de/apps/expression/ ''Subti''Express]''': [http://subtiwiki.uni-goettingen.de/apps/expression/expression.php?search=BSU32870 mdtR]
|-
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 17 kDa, 6.376 
|-
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 465 bp, 155 aa
|-
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yusN]]'', ''[[mdtP]]''
|-
|style="background:#FAF8CC;" align="center"|'''Sequences'''||[http://bsubcyc.org/BSUB/sequence-aa?type=GENE&object=BSU32870 Protein] [http://bsubcyc.org/BSUB/sequence?type=GENE&object=BSU32870 DNA] [http://bsubcyc.org/BSUB/seq-selector?chromosome=CHROM-1&object=BSU32870 DNA_with_flanks]
|-
|colspan="2" | '''Genetic context''' <br/> [[Image:yusO_context.gif]]
|-
|}
__TOC__
<br/><br/>
= [[Categories]] containing this gene/protein =
{{SubtiWiki category|[[transcription factors and their control]]}},
{{SubtiWiki category|[[resistance against toxins/ antibiotics]]}}
= This gene is a member of the following [[regulons]] =
{{SubtiWiki regulon|[[MdtR regulon]]}}
=The [[MdtR regulon]]:=
* ''[[mdtR]]-[[mdtP]]''
=The gene=
=== Basic information ===
* '''Locus tag:'''
===Phenotypes of a mutant ===
=== Database entries ===
* '''DBTBS entry:''' no entry
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG14027]
=== Additional information===
=The protein=
=== Basic information/ Evolution ===
* '''Catalyzed reaction/ biological activity:'''
* '''Protein family:'''
* '''Paralogous protein(s):'''
=== Extended information on the protein ===
* '''Kinetic information:'''
* '''Domains:'''
* '''Modification:'''
* '''Cofactor(s):'''
* '''Effectors of protein activity:'''
* '''[[SubtInteract|Interactions]]:'''
* '''[[Localization]]:'''
=== Database entries ===
* '''Structure:''' [http://www.rcsb.org/pdb/explore.do?structureId=1S3J 1S3J]
* '''UniProt:''' [http://www.uniprot.org/uniprot/O32181 O32181]
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU32870]
* '''E.C. number:'''
=== Additional information===
=Expression and regulation=
* '''Operon:''' ''[[mdtR]]-[[mdtP]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/19286808 PubMed]
* '''[[Sigma factor]]:'''
* '''Regulation:'''
* '''Regulatory mechanism:''' repression by MdtR [http://www.ncbi.nlm.nih.gov/sites/entrez/19286808 PubMed]
* '''Additional information:'''
=Biological materials =
* '''Mutant:''' GP1115 (spc), available in [[Stülke]] lab
* '''Expression vector:'''
       
* '''lacZ fusion:'''
* '''GFP fusion:'''
* '''two-hybrid system:'''
* '''Antibody:'''
=Labs working on this gene/protein=
=Your additional remarks=
=References=
<pubmed>19286808, </pubmed>
[[Category:Protein-coding genes]]

Latest revision as of 14:42, 2 April 2014